miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8151 3' -55.3 NC_001978.2 + 39326 1.15 0.00029
Target:  5'- aCCUCAGCGGCGAAGCCCGCAAUACGCg -3'
miRNA:   3'- -GGAGUCGCCGCUUCGGGCGUUAUGCG- -5'
8151 3' -55.3 NC_001978.2 + 20317 0.79 0.105331
Target:  5'- gCUCGaCGGUcaagGAAGCCCGCAcgGCGCg -3'
miRNA:   3'- gGAGUcGCCG----CUUCGGGCGUuaUGCG- -5'
8151 3' -55.3 NC_001978.2 + 15627 0.77 0.148053
Target:  5'- gCCUCAGUgccGGUGAAGCcuuCCGCAacagcgacuucGUACGCg -3'
miRNA:   3'- -GGAGUCG---CCGCUUCG---GGCGU-----------UAUGCG- -5'
8151 3' -55.3 NC_001978.2 + 31402 0.77 0.152252
Target:  5'- gCUCAGCGGaaGAGCgCCGCAAcccgggACGCg -3'
miRNA:   3'- gGAGUCGCCgcUUCG-GGCGUUa-----UGCG- -5'
8151 3' -55.3 NC_001978.2 + 416 0.74 0.223278
Target:  5'- -gUCGGCGcgacggucGUGAAGCUCGCAGUaACGCa -3'
miRNA:   3'- ggAGUCGC--------CGCUUCGGGCGUUA-UGCG- -5'
8151 3' -55.3 NC_001978.2 + 591 0.73 0.282571
Target:  5'- gCUUCAGCGGCaacGAuGCCagGCGcAUACGCg -3'
miRNA:   3'- -GGAGUCGCCG---CUuCGGg-CGU-UAUGCG- -5'
8151 3' -55.3 NC_001978.2 + 37458 0.72 0.304937
Target:  5'- gCCUCAGCGGCGcuaucgauGGUCgGCGccguugcuucGUugGCu -3'
miRNA:   3'- -GGAGUCGCCGCu-------UCGGgCGU----------UAugCG- -5'
8151 3' -55.3 NC_001978.2 + 32250 0.72 0.312689
Target:  5'- cCCUCAGCGGUGcgcgcGUCCGuCGAUACcCg -3'
miRNA:   3'- -GGAGUCGCCGCuu---CGGGC-GUUAUGcG- -5'
8151 3' -55.3 NC_001978.2 + 34025 0.72 0.320589
Target:  5'- gCCUgGGUGGCGAcuCgCGCGgacuGUACGCg -3'
miRNA:   3'- -GGAgUCGCCGCUucGgGCGU----UAUGCG- -5'
8151 3' -55.3 NC_001978.2 + 18514 0.72 0.328637
Target:  5'- aCCUgAGCGGCGcuauGCCCcCAGgaugGCGUg -3'
miRNA:   3'- -GGAgUCGCCGCuu--CGGGcGUUa---UGCG- -5'
8151 3' -55.3 NC_001978.2 + 26826 0.71 0.362309
Target:  5'- uCCUCAaacGUGGCGAAGggcgucgucUUCGUGAUGCGCc -3'
miRNA:   3'- -GGAGU---CGCCGCUUC---------GGGCGUUAUGCG- -5'
8151 3' -55.3 NC_001978.2 + 39451 0.71 0.371094
Target:  5'- aCUCAGCGGgcuCGAugaucGGUCCGCAAUcaaGCu -3'
miRNA:   3'- gGAGUCGCC---GCU-----UCGGGCGUUAug-CG- -5'
8151 3' -55.3 NC_001978.2 + 23924 0.71 0.380022
Target:  5'- cCUUCA-CGGCGucGUCagaaGCGGUGCGCa -3'
miRNA:   3'- -GGAGUcGCCGCuuCGGg---CGUUAUGCG- -5'
8151 3' -55.3 NC_001978.2 + 33503 0.71 0.380022
Target:  5'- gCUCAGCGcGCGGucuuucuucGGCCCGUAgccGUAccCGCc -3'
miRNA:   3'- gGAGUCGC-CGCU---------UCGGGCGU---UAU--GCG- -5'
8151 3' -55.3 NC_001978.2 + 9802 0.7 0.407656
Target:  5'- uCCUCAGCcugGGUGccgaaGAGCgucacagcggUCGCGAUACGCu -3'
miRNA:   3'- -GGAGUCG---CCGC-----UUCG----------GGCGUUAUGCG- -5'
8151 3' -55.3 NC_001978.2 + 4986 0.7 0.407656
Target:  5'- gCUCAGCGGuCGcacGCUCGCGcgccucaaaGUugGCg -3'
miRNA:   3'- gGAGUCGCC-GCuu-CGGGCGU---------UAugCG- -5'
8151 3' -55.3 NC_001978.2 + 25496 0.69 0.44639
Target:  5'- gCCUCAGCcugGGCGAcgucgAGCCCGaacCGGUcggcgGCGUa -3'
miRNA:   3'- -GGAGUCG---CCGCU-----UCGGGC---GUUA-----UGCG- -5'
8151 3' -55.3 NC_001978.2 + 27113 0.69 0.456391
Target:  5'- -gUCGGCGGgcauUGuGGCCUggGCGGUGCGCg -3'
miRNA:   3'- ggAGUCGCC----GCuUCGGG--CGUUAUGCG- -5'
8151 3' -55.3 NC_001978.2 + 21406 0.69 0.466512
Target:  5'- nCCUUAcgGGCGAAGCCCcCGG-GCGCg -3'
miRNA:   3'- -GGAGUcgCCGCUUCGGGcGUUaUGCG- -5'
8151 3' -55.3 NC_001978.2 + 8229 0.69 0.466512
Target:  5'- gCUCAGCGGCuc-GCgUGCcGUAUGCc -3'
miRNA:   3'- gGAGUCGCCGcuuCGgGCGuUAUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.