miRNA display CGI


Results 1 - 20 of 50 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8151 3' -55.3 NC_001978.2 + 416 0.74 0.223278
Target:  5'- -gUCGGCGcgacggucGUGAAGCUCGCAGUaACGCa -3'
miRNA:   3'- ggAGUCGC--------CGCUUCGGGCGUUA-UGCG- -5'
8151 3' -55.3 NC_001978.2 + 591 0.73 0.282571
Target:  5'- gCUUCAGCGGCaacGAuGCCagGCGcAUACGCg -3'
miRNA:   3'- -GGAGUCGCCG---CUuCGGg-CGU-UAUGCG- -5'
8151 3' -55.3 NC_001978.2 + 4986 0.7 0.407656
Target:  5'- gCUCAGCGGuCGcacGCUCGCGcgccucaaaGUugGCg -3'
miRNA:   3'- gGAGUCGCC-GCuu-CGGGCGU---------UAugCG- -5'
8151 3' -55.3 NC_001978.2 + 7899 0.66 0.672207
Target:  5'- cCCgggCGaCGGCGugacGCCCGCAAUcaagcucACGUa -3'
miRNA:   3'- -GGa--GUcGCCGCuu--CGGGCGUUA-------UGCG- -5'
8151 3' -55.3 NC_001978.2 + 8229 0.69 0.466512
Target:  5'- gCUCAGCGGCuc-GCgUGCcGUAUGCc -3'
miRNA:   3'- gGAGUCGCCGcuuCGgGCGuUAUGCG- -5'
8151 3' -55.3 NC_001978.2 + 9499 0.69 0.487091
Target:  5'- uCUUCAG-GGUGgcGCUCGCG--ACGCu -3'
miRNA:   3'- -GGAGUCgCCGCuuCGGGCGUuaUGCG- -5'
8151 3' -55.3 NC_001978.2 + 9802 0.7 0.407656
Target:  5'- uCCUCAGCcugGGUGccgaaGAGCgucacagcggUCGCGAUACGCu -3'
miRNA:   3'- -GGAGUCG---CCGC-----UUCG----------GGCGUUAUGCG- -5'
8151 3' -55.3 NC_001978.2 + 9829 0.68 0.529464
Target:  5'- ----cGCGGCGAAGUCgGCAGgcgaaacgAUGCa -3'
miRNA:   3'- ggaguCGCCGCUUCGGgCGUUa-------UGCG- -5'
8151 3' -55.3 NC_001978.2 + 10800 0.67 0.583065
Target:  5'- cCCUUcGCGGCacgccccacagcgGAAGCaaGCGAcgACGCa -3'
miRNA:   3'- -GGAGuCGCCG-------------CUUCGggCGUUa-UGCG- -5'
8151 3' -55.3 NC_001978.2 + 13641 0.67 0.573115
Target:  5'- aCUCAGCGGCaauGGCgacUCGCGccUAUGCg -3'
miRNA:   3'- gGAGUCGCCGcu-UCG---GGCGUu-AUGCG- -5'
8151 3' -55.3 NC_001978.2 + 15627 0.77 0.148053
Target:  5'- gCCUCAGUgccGGUGAAGCcuuCCGCAacagcgacuucGUACGCg -3'
miRNA:   3'- -GGAGUCG---CCGCUUCG---GGCGU-----------UAUGCG- -5'
8151 3' -55.3 NC_001978.2 + 17589 0.67 0.606403
Target:  5'- -gUCGGCGGagaCGGAgccGCCCGCA--ACGUc -3'
miRNA:   3'- ggAGUCGCC---GCUU---CGGGCGUuaUGCG- -5'
8151 3' -55.3 NC_001978.2 + 18161 0.67 0.595272
Target:  5'- gCgUCGGCGcCGGAGUaaCCGCGcuUGCGCu -3'
miRNA:   3'- -GgAGUCGCcGCUUCG--GGCGUu-AUGCG- -5'
8151 3' -55.3 NC_001978.2 + 18514 0.72 0.328637
Target:  5'- aCCUgAGCGGCGcuauGCCCcCAGgaugGCGUg -3'
miRNA:   3'- -GGAgUCGCCGCuu--CGGGcGUUa---UGCG- -5'
8151 3' -55.3 NC_001978.2 + 19155 0.66 0.648825
Target:  5'- -gUCAGuCGGCGggGgCCGaaggugcuaGCGCg -3'
miRNA:   3'- ggAGUC-GCCGCuuCgGGCguua-----UGCG- -5'
8151 3' -55.3 NC_001978.2 + 19462 0.66 0.617556
Target:  5'- gCCUCAGCGGCaAGGaucuUCGCGcacCGCu -3'
miRNA:   3'- -GGAGUCGCCGcUUCg---GGCGUuauGCG- -5'
8151 3' -55.3 NC_001978.2 + 20036 0.68 0.529464
Target:  5'- gCUCAGCGGCc-GGUCCcCAAUACu- -3'
miRNA:   3'- gGAGUCGCCGcuUCGGGcGUUAUGcg -5'
8151 3' -55.3 NC_001978.2 + 20317 0.79 0.105331
Target:  5'- gCUCGaCGGUcaagGAAGCCCGCAcgGCGCg -3'
miRNA:   3'- gGAGUcGCCG----CUUCGGGCGUuaUGCG- -5'
8151 3' -55.3 NC_001978.2 + 20379 0.67 0.606403
Target:  5'- gCCgaAGCGGCGAAGgCCGaAGUcgagucGCGCc -3'
miRNA:   3'- -GGagUCGCCGCUUCgGGCgUUA------UGCG- -5'
8151 3' -55.3 NC_001978.2 + 20684 0.69 0.476746
Target:  5'- aCCUCAGCGGC--AGCguucuucgUCGUcuUGCGCu -3'
miRNA:   3'- -GGAGUCGCCGcuUCG--------GGCGuuAUGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.