Results 1 - 20 of 50 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8151 | 3' | -55.3 | NC_001978.2 | + | 26041 | 0.66 | 0.673317 |
Target: 5'- gCC-CAGguugaGGCGGAGCaCCGUAAggccgaagucGCGCa -3' miRNA: 3'- -GGaGUCg----CCGCUUCG-GGCGUUa---------UGCG- -5' |
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8151 | 3' | -55.3 | NC_001978.2 | + | 27432 | 0.67 | 0.595272 |
Target: 5'- -gUCGGC-GUGAAGUUCGCug-ACGCg -3' miRNA: 3'- ggAGUCGcCGCUUCGGGCGuuaUGCG- -5' |
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8151 | 3' | -55.3 | NC_001978.2 | + | 20379 | 0.67 | 0.606403 |
Target: 5'- gCCgaAGCGGCGAAGgCCGaAGUcgagucGCGCc -3' miRNA: 3'- -GGagUCGCCGCUUCgGGCgUUA------UGCG- -5' |
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8151 | 3' | -55.3 | NC_001978.2 | + | 30051 | 0.67 | 0.606403 |
Target: 5'- gCUCAGC-GCauGGCuCCGCAuggugGCGCa -3' miRNA: 3'- gGAGUCGcCGcuUCG-GGCGUua---UGCG- -5' |
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8151 | 3' | -55.3 | NC_001978.2 | + | 25593 | 0.66 | 0.617556 |
Target: 5'- aCCUgAGCGGCaaguGCCCcgGUcGUugGCu -3' miRNA: 3'- -GGAgUCGCCGcuu-CGGG--CGuUAugCG- -5' |
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8151 | 3' | -55.3 | NC_001978.2 | + | 26252 | 0.66 | 0.639894 |
Target: 5'- --aCGGCgugaccugGGUGAAGUCgGCAAcGCGCg -3' miRNA: 3'- ggaGUCG--------CCGCUUCGGgCGUUaUGCG- -5' |
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8151 | 3' | -55.3 | NC_001978.2 | + | 38516 | 0.66 | 0.639894 |
Target: 5'- cCUUCAGC-GCGAAGUCgaGCGcgACGg -3' miRNA: 3'- -GGAGUCGcCGCUUCGGg-CGUuaUGCg -5' |
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8151 | 3' | -55.3 | NC_001978.2 | + | 23228 | 0.66 | 0.639894 |
Target: 5'- aUCUCGacCGGCGAacAGUCCGUugcggACGCu -3' miRNA: 3'- -GGAGUc-GCCGCU--UCGGGCGuua--UGCG- -5' |
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8151 | 3' | -55.3 | NC_001978.2 | + | 7899 | 0.66 | 0.672207 |
Target: 5'- cCCgggCGaCGGCGugacGCCCGCAAUcaagcucACGUa -3' miRNA: 3'- -GGa--GUcGCCGCuu--CGGGCGUUA-------UGCG- -5' |
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8151 | 3' | -55.3 | NC_001978.2 | + | 13641 | 0.67 | 0.573115 |
Target: 5'- aCUCAGCGGCaauGGCgacUCGCGccUAUGCg -3' miRNA: 3'- gGAGUCGCCGcu-UCG---GGCGUu-AUGCG- -5' |
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8151 | 3' | -55.3 | NC_001978.2 | + | 38594 | 0.68 | 0.540274 |
Target: 5'- gUUCGGgaCGGCGGAgcGCCCGgAGUucgaACGCa -3' miRNA: 3'- gGAGUC--GCCGCUU--CGGGCgUUA----UGCG- -5' |
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8151 | 3' | -55.3 | NC_001978.2 | + | 24571 | 0.68 | 0.529464 |
Target: 5'- uCgUCGGCGGCGucauGGUCgGCA-UAUGUg -3' miRNA: 3'- -GgAGUCGCCGCu---UCGGgCGUuAUGCG- -5' |
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8151 | 3' | -55.3 | NC_001978.2 | + | 31402 | 0.77 | 0.152252 |
Target: 5'- gCUCAGCGGaaGAGCgCCGCAAcccgggACGCg -3' miRNA: 3'- gGAGUCGCCgcUUCG-GGCGUUa-----UGCG- -5' |
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8151 | 3' | -55.3 | NC_001978.2 | + | 34025 | 0.72 | 0.320589 |
Target: 5'- gCCUgGGUGGCGAcuCgCGCGgacuGUACGCg -3' miRNA: 3'- -GGAgUCGCCGCUucGgGCGU----UAUGCG- -5' |
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8151 | 3' | -55.3 | NC_001978.2 | + | 27113 | 0.69 | 0.456391 |
Target: 5'- -gUCGGCGGgcauUGuGGCCUggGCGGUGCGCg -3' miRNA: 3'- ggAGUCGCC----GCuUCGGG--CGUUAUGCG- -5' |
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8151 | 3' | -55.3 | NC_001978.2 | + | 8229 | 0.69 | 0.466512 |
Target: 5'- gCUCAGCGGCuc-GCgUGCcGUAUGCc -3' miRNA: 3'- gGAGUCGCCGcuuCGgGCGuUAUGCG- -5' |
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8151 | 3' | -55.3 | NC_001978.2 | + | 34258 | 0.69 | 0.486052 |
Target: 5'- gCCgUCGGCGGagcuugcCGGAGCCaCGCuguacacgACGCg -3' miRNA: 3'- -GG-AGUCGCC-------GCUUCGG-GCGuua-----UGCG- -5' |
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8151 | 3' | -55.3 | NC_001978.2 | + | 9499 | 0.69 | 0.487091 |
Target: 5'- uCUUCAG-GGUGgcGCUCGCG--ACGCu -3' miRNA: 3'- -GGAGUCgCCGCuuCGGGCGUuaUGCG- -5' |
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8151 | 3' | -55.3 | NC_001978.2 | + | 23510 | 0.68 | 0.518734 |
Target: 5'- --gCAGCGGCGAAGga-GUAcgACGCg -3' miRNA: 3'- ggaGUCGCCGCUUCgggCGUuaUGCG- -5' |
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8151 | 3' | -55.3 | NC_001978.2 | + | 9829 | 0.68 | 0.529464 |
Target: 5'- ----cGCGGCGAAGUCgGCAGgcgaaacgAUGCa -3' miRNA: 3'- ggaguCGCCGCUUCGGgCGUUa-------UGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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