Results 1 - 20 of 50 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8151 | 3' | -55.3 | NC_001978.2 | + | 21660 | 0.66 | 0.673317 |
Target: 5'- gCUguGaCGGCaugacGAAGCCCcGuCGGUACGUg -3' miRNA: 3'- gGAguC-GCCG-----CUUCGGG-C-GUUAUGCG- -5' |
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8151 | 3' | -55.3 | NC_001978.2 | + | 9802 | 0.7 | 0.407656 |
Target: 5'- uCCUCAGCcugGGUGccgaaGAGCgucacagcggUCGCGAUACGCu -3' miRNA: 3'- -GGAGUCG---CCGC-----UUCG----------GGCGUUAUGCG- -5' |
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8151 | 3' | -55.3 | NC_001978.2 | + | 33503 | 0.71 | 0.380022 |
Target: 5'- gCUCAGCGcGCGGucuuucuucGGCCCGUAgccGUAccCGCc -3' miRNA: 3'- gGAGUCGC-CGCU---------UCGGGCGU---UAU--GCG- -5' |
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8151 | 3' | -55.3 | NC_001978.2 | + | 39326 | 1.15 | 0.00029 |
Target: 5'- aCCUCAGCGGCGAAGCCCGCAAUACGCg -3' miRNA: 3'- -GGAGUCGCCGCUUCGGGCGUUAUGCG- -5' |
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8151 | 3' | -55.3 | NC_001978.2 | + | 19462 | 0.66 | 0.617556 |
Target: 5'- gCCUCAGCGGCaAGGaucuUCGCGcacCGCu -3' miRNA: 3'- -GGAGUCGCCGcUUCg---GGCGUuauGCG- -5' |
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8151 | 3' | -55.3 | NC_001978.2 | + | 17589 | 0.67 | 0.606403 |
Target: 5'- -gUCGGCGGagaCGGAgccGCCCGCA--ACGUc -3' miRNA: 3'- ggAGUCGCC---GCUU---CGGGCGUuaUGCG- -5' |
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8151 | 3' | -55.3 | NC_001978.2 | + | 28080 | 0.67 | 0.595272 |
Target: 5'- aCUgAGCGGCuuGAGGCCgGUcccAAUGcCGCc -3' miRNA: 3'- gGAgUCGCCG--CUUCGGgCG---UUAU-GCG- -5' |
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8151 | 3' | -55.3 | NC_001978.2 | + | 10800 | 0.67 | 0.583065 |
Target: 5'- cCCUUcGCGGCacgccccacagcgGAAGCaaGCGAcgACGCa -3' miRNA: 3'- -GGAGuCGCCG-------------CUUCGggCGUUa-UGCG- -5' |
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8151 | 3' | -55.3 | NC_001978.2 | + | 30038 | 0.68 | 0.518734 |
Target: 5'- gCUCAGCGGC-AAGCCggucgGCAAgguCGUc -3' miRNA: 3'- gGAGUCGCCGcUUCGGg----CGUUau-GCG- -5' |
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8151 | 3' | -55.3 | NC_001978.2 | + | 4986 | 0.7 | 0.407656 |
Target: 5'- gCUCAGCGGuCGcacGCUCGCGcgccucaaaGUugGCg -3' miRNA: 3'- gGAGUCGCC-GCuu-CGGGCGU---------UAugCG- -5' |
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8151 | 3' | -55.3 | NC_001978.2 | + | 21406 | 0.69 | 0.466512 |
Target: 5'- nCCUUAcgGGCGAAGCCCcCGG-GCGCg -3' miRNA: 3'- -GGAGUcgCCGCUUCGGGcGUUaUGCG- -5' |
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8151 | 3' | -55.3 | NC_001978.2 | + | 20036 | 0.68 | 0.529464 |
Target: 5'- gCUCAGCGGCc-GGUCCcCAAUACu- -3' miRNA: 3'- gGAGUCGCCGcuUCGGGcGUUAUGcg -5' |
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8151 | 3' | -55.3 | NC_001978.2 | + | 35635 | 0.66 | 0.651056 |
Target: 5'- gCUCAGgGGCGccgucuccGGCUCGaCAuccgGCGCu -3' miRNA: 3'- gGAGUCgCCGCu-------UCGGGC-GUua--UGCG- -5' |
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8151 | 3' | -55.3 | NC_001978.2 | + | 40335 | 0.69 | 0.466512 |
Target: 5'- cCCUUcccGCuGCcccagGAAGCCCGCuGUGCGCc -3' miRNA: 3'- -GGAGu--CGcCG-----CUUCGGGCGuUAUGCG- -5' |
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8151 | 3' | -55.3 | NC_001978.2 | + | 19155 | 0.66 | 0.648825 |
Target: 5'- -gUCAGuCGGCGggGgCCGaaggugcuaGCGCg -3' miRNA: 3'- ggAGUC-GCCGCuuCgGGCguua-----UGCG- -5' |
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8151 | 3' | -55.3 | NC_001978.2 | + | 38200 | 0.67 | 0.562108 |
Target: 5'- aCgUCAGCGGCuc-GCCC-CG-UGCGCu -3' miRNA: 3'- -GgAGUCGCCGcuuCGGGcGUuAUGCG- -5' |
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8151 | 3' | -55.3 | NC_001978.2 | + | 25496 | 0.69 | 0.44639 |
Target: 5'- gCCUCAGCcugGGCGAcgucgAGCCCGaacCGGUcggcgGCGUa -3' miRNA: 3'- -GGAGUCG---CCGCU-----UCGGGC---GUUA-----UGCG- -5' |
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8151 | 3' | -55.3 | NC_001978.2 | + | 23924 | 0.71 | 0.380022 |
Target: 5'- cCUUCA-CGGCGucGUCagaaGCGGUGCGCa -3' miRNA: 3'- -GGAGUcGCCGCuuCGGg---CGUUAUGCG- -5' |
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8151 | 3' | -55.3 | NC_001978.2 | + | 40000 | 0.66 | 0.628723 |
Target: 5'- gCUUCGGCGGCuucAAGUUCgGCAAgcCGCu -3' miRNA: 3'- -GGAGUCGCCGc--UUCGGG-CGUUauGCG- -5' |
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8151 | 3' | -55.3 | NC_001978.2 | + | 18161 | 0.67 | 0.595272 |
Target: 5'- gCgUCGGCGcCGGAGUaaCCGCGcuUGCGCu -3' miRNA: 3'- -GgAGUCGCcGCUUCG--GGCGUu-AUGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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