miRNA display CGI


Results 21 - 40 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8151 3' -55.3 NC_001978.2 + 9829 0.68 0.529464
Target:  5'- ----cGCGGCGAAGUCgGCAGgcgaaacgAUGCa -3'
miRNA:   3'- ggaguCGCCGCUUCGGgCGUUa-------UGCG- -5'
8151 3' -55.3 NC_001978.2 + 30038 0.68 0.518734
Target:  5'- gCUCAGCGGC-AAGCCggucgGCAAgguCGUc -3'
miRNA:   3'- gGAGUCGCCGcUUCGGg----CGUUau-GCG- -5'
8151 3' -55.3 NC_001978.2 + 20684 0.69 0.476746
Target:  5'- aCCUCAGCGGC--AGCguucuucgUCGUcuUGCGCu -3'
miRNA:   3'- -GGAGUCGCCGcuUCG--------GGCGuuAUGCG- -5'
8151 3' -55.3 NC_001978.2 + 21406 0.69 0.466512
Target:  5'- nCCUUAcgGGCGAAGCCCcCGG-GCGCg -3'
miRNA:   3'- -GGAGUcgCCGCUUCGGGcGUUaUGCG- -5'
8151 3' -55.3 NC_001978.2 + 40335 0.69 0.466512
Target:  5'- cCCUUcccGCuGCcccagGAAGCCCGCuGUGCGCc -3'
miRNA:   3'- -GGAGu--CGcCG-----CUUCGGGCGuUAUGCG- -5'
8151 3' -55.3 NC_001978.2 + 25496 0.69 0.44639
Target:  5'- gCCUCAGCcugGGCGAcgucgAGCCCGaacCGGUcggcgGCGUa -3'
miRNA:   3'- -GGAGUCG---CCGCU-----UCGGGC---GUUA-----UGCG- -5'
8151 3' -55.3 NC_001978.2 + 4986 0.7 0.407656
Target:  5'- gCUCAGCGGuCGcacGCUCGCGcgccucaaaGUugGCg -3'
miRNA:   3'- gGAGUCGCC-GCuu-CGGGCGU---------UAugCG- -5'
8151 3' -55.3 NC_001978.2 + 9802 0.7 0.407656
Target:  5'- uCCUCAGCcugGGUGccgaaGAGCgucacagcggUCGCGAUACGCu -3'
miRNA:   3'- -GGAGUCG---CCGC-----UUCG----------GGCGUUAUGCG- -5'
8151 3' -55.3 NC_001978.2 + 23924 0.71 0.380022
Target:  5'- cCUUCA-CGGCGucGUCagaaGCGGUGCGCa -3'
miRNA:   3'- -GGAGUcGCCGCuuCGGg---CGUUAUGCG- -5'
8151 3' -55.3 NC_001978.2 + 20036 0.68 0.529464
Target:  5'- gCUCAGCGGCc-GGUCCcCAAUACu- -3'
miRNA:   3'- gGAGUCGCCGcuUCGGGcGUUAUGcg -5'
8151 3' -55.3 NC_001978.2 + 38200 0.67 0.562108
Target:  5'- aCgUCAGCGGCuc-GCCC-CG-UGCGCu -3'
miRNA:   3'- -GgAGUCGCCGcuuCGGGcGUuAUGCG- -5'
8151 3' -55.3 NC_001978.2 + 10800 0.67 0.583065
Target:  5'- cCCUUcGCGGCacgccccacagcgGAAGCaaGCGAcgACGCa -3'
miRNA:   3'- -GGAGuCGCCG-------------CUUCGggCGUUa-UGCG- -5'
8151 3' -55.3 NC_001978.2 + 39326 1.15 0.00029
Target:  5'- aCCUCAGCGGCGAAGCCCGCAAUACGCg -3'
miRNA:   3'- -GGAGUCGCCGCUUCGGGCGUUAUGCG- -5'
8151 3' -55.3 NC_001978.2 + 35635 0.66 0.651056
Target:  5'- gCUCAGgGGCGccgucuccGGCUCGaCAuccgGCGCu -3'
miRNA:   3'- gGAGUCgCCGCu-------UCGGGC-GUua--UGCG- -5'
8151 3' -55.3 NC_001978.2 + 19155 0.66 0.648825
Target:  5'- -gUCAGuCGGCGggGgCCGaaggugcuaGCGCg -3'
miRNA:   3'- ggAGUC-GCCGCuuCgGGCguua-----UGCG- -5'
8151 3' -55.3 NC_001978.2 + 40000 0.66 0.628723
Target:  5'- gCUUCGGCGGCuucAAGUUCgGCAAgcCGCu -3'
miRNA:   3'- -GGAGUCGCCGc--UUCGGG-CGUUauGCG- -5'
8151 3' -55.3 NC_001978.2 + 19462 0.66 0.617556
Target:  5'- gCCUCAGCGGCaAGGaucuUCGCGcacCGCu -3'
miRNA:   3'- -GGAGUCGCCGcUUCg---GGCGUuauGCG- -5'
8151 3' -55.3 NC_001978.2 + 17589 0.67 0.606403
Target:  5'- -gUCGGCGGagaCGGAgccGCCCGCA--ACGUc -3'
miRNA:   3'- ggAGUCGCC---GCUU---CGGGCGUuaUGCG- -5'
8151 3' -55.3 NC_001978.2 + 18161 0.67 0.595272
Target:  5'- gCgUCGGCGcCGGAGUaaCCGCGcuUGCGCu -3'
miRNA:   3'- -GgAGUCGCcGCUUCG--GGCGUu-AUGCG- -5'
8151 3' -55.3 NC_001978.2 + 28080 0.67 0.595272
Target:  5'- aCUgAGCGGCuuGAGGCCgGUcccAAUGcCGCc -3'
miRNA:   3'- gGAgUCGCCG--CUUCGGgCG---UUAU-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.