miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8151 3' -55.3 NC_001978.2 + 40335 0.69 0.466512
Target:  5'- cCCUUcccGCuGCcccagGAAGCCCGCuGUGCGCc -3'
miRNA:   3'- -GGAGu--CGcCG-----CUUCGGGCGuUAUGCG- -5'
8151 3' -55.3 NC_001978.2 + 40000 0.66 0.628723
Target:  5'- gCUUCGGCGGCuucAAGUUCgGCAAgcCGCu -3'
miRNA:   3'- -GGAGUCGCCGc--UUCGGG-CGUUauGCG- -5'
8151 3' -55.3 NC_001978.2 + 39451 0.71 0.371094
Target:  5'- aCUCAGCGGgcuCGAugaucGGUCCGCAAUcaaGCu -3'
miRNA:   3'- gGAGUCGCC---GCU-----UCGGGCGUUAug-CG- -5'
8151 3' -55.3 NC_001978.2 + 39326 1.15 0.00029
Target:  5'- aCCUCAGCGGCGAAGCCCGCAAUACGCg -3'
miRNA:   3'- -GGAGUCGCCGCUUCGGGCGUUAUGCG- -5'
8151 3' -55.3 NC_001978.2 + 38594 0.68 0.540274
Target:  5'- gUUCGGgaCGGCGGAgcGCCCGgAGUucgaACGCa -3'
miRNA:   3'- gGAGUC--GCCGCUU--CGGGCgUUA----UGCG- -5'
8151 3' -55.3 NC_001978.2 + 38516 0.66 0.639894
Target:  5'- cCUUCAGC-GCGAAGUCgaGCGcgACGg -3'
miRNA:   3'- -GGAGUCGcCGCUUCGGg-CGUuaUGCg -5'
8151 3' -55.3 NC_001978.2 + 38200 0.67 0.562108
Target:  5'- aCgUCAGCGGCuc-GCCC-CG-UGCGCu -3'
miRNA:   3'- -GgAGUCGCCGcuuCGGGcGUuAUGCG- -5'
8151 3' -55.3 NC_001978.2 + 37458 0.72 0.304937
Target:  5'- gCCUCAGCGGCGcuaucgauGGUCgGCGccguugcuucGUugGCu -3'
miRNA:   3'- -GGAGUCGCCGCu-------UCGGgCGU----------UAugCG- -5'
8151 3' -55.3 NC_001978.2 + 35635 0.66 0.651056
Target:  5'- gCUCAGgGGCGccgucuccGGCUCGaCAuccgGCGCu -3'
miRNA:   3'- gGAGUCgCCGCu-------UCGGGC-GUua--UGCG- -5'
8151 3' -55.3 NC_001978.2 + 34258 0.69 0.486052
Target:  5'- gCCgUCGGCGGagcuugcCGGAGCCaCGCuguacacgACGCg -3'
miRNA:   3'- -GG-AGUCGCC-------GCUUCGG-GCGuua-----UGCG- -5'
8151 3' -55.3 NC_001978.2 + 34025 0.72 0.320589
Target:  5'- gCCUgGGUGGCGAcuCgCGCGgacuGUACGCg -3'
miRNA:   3'- -GGAgUCGCCGCUucGgGCGU----UAUGCG- -5'
8151 3' -55.3 NC_001978.2 + 33503 0.71 0.380022
Target:  5'- gCUCAGCGcGCGGucuuucuucGGCCCGUAgccGUAccCGCc -3'
miRNA:   3'- gGAGUCGC-CGCU---------UCGGGCGU---UAU--GCG- -5'
8151 3' -55.3 NC_001978.2 + 32250 0.72 0.312689
Target:  5'- cCCUCAGCGGUGcgcgcGUCCGuCGAUACcCg -3'
miRNA:   3'- -GGAGUCGCCGCuu---CGGGC-GUUAUGcG- -5'
8151 3' -55.3 NC_001978.2 + 31402 0.77 0.152252
Target:  5'- gCUCAGCGGaaGAGCgCCGCAAcccgggACGCg -3'
miRNA:   3'- gGAGUCGCCgcUUCG-GGCGUUa-----UGCG- -5'
8151 3' -55.3 NC_001978.2 + 30051 0.67 0.606403
Target:  5'- gCUCAGC-GCauGGCuCCGCAuggugGCGCa -3'
miRNA:   3'- gGAGUCGcCGcuUCG-GGCGUua---UGCG- -5'
8151 3' -55.3 NC_001978.2 + 30038 0.68 0.518734
Target:  5'- gCUCAGCGGC-AAGCCggucgGCAAgguCGUc -3'
miRNA:   3'- gGAGUCGCCGcUUCGGg----CGUUau-GCG- -5'
8151 3' -55.3 NC_001978.2 + 28080 0.67 0.595272
Target:  5'- aCUgAGCGGCuuGAGGCCgGUcccAAUGcCGCc -3'
miRNA:   3'- gGAgUCGCCG--CUUCGGgCG---UUAU-GCG- -5'
8151 3' -55.3 NC_001978.2 + 27432 0.67 0.595272
Target:  5'- -gUCGGC-GUGAAGUUCGCug-ACGCg -3'
miRNA:   3'- ggAGUCGcCGCUUCGGGCGuuaUGCG- -5'
8151 3' -55.3 NC_001978.2 + 27113 0.69 0.456391
Target:  5'- -gUCGGCGGgcauUGuGGCCUggGCGGUGCGCg -3'
miRNA:   3'- ggAGUCGCC----GCuUCGGG--CGUUAUGCG- -5'
8151 3' -55.3 NC_001978.2 + 26826 0.71 0.362309
Target:  5'- uCCUCAaacGUGGCGAAGggcgucgucUUCGUGAUGCGCc -3'
miRNA:   3'- -GGAGU---CGCCGCUUC---------GGGCGUUAUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.