Results 1 - 20 of 42 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8153 | 3' | -54 | NC_001978.2 | + | 22197 | 0.66 | 0.651379 |
Target: 5'- aAGUGcucGaCGUAGGGCGUCagaucAGCGCGCAc -3' miRNA: 3'- gUCAU---C-GCGUUUCGCAGc----UCGUGCGU- -5' |
|||||||
8153 | 3' | -54 | NC_001978.2 | + | 39858 | 0.71 | 0.392939 |
Target: 5'- ---gGGCGUucAGGGCGUCG-GCGCGCu -3' miRNA: 3'- gucaUCGCG--UUUCGCAGCuCGUGCGu -5' |
|||||||
8153 | 3' | -54 | NC_001978.2 | + | 27318 | 0.72 | 0.339047 |
Target: 5'- gCGG-AGuCGuCGGcAGCGUCGAGCACGCc -3' miRNA: 3'- -GUCaUC-GC-GUU-UCGCAGCUCGUGCGu -5' |
|||||||
8153 | 3' | -54 | NC_001978.2 | + | 40965 | 1.08 | 0.000926 |
Target: 5'- cCAGUAGCGCAAAGCGUCGAGCACGCAc -3' miRNA: 3'- -GUCAUCGCGUUUCGCAGCUCGUGCGU- -5' |
|||||||
8153 | 3' | -54 | NC_001978.2 | + | 870 | 0.66 | 0.696852 |
Target: 5'- gGGUcgAGUGCuccGGCGcCuGGGCGCGCGa -3' miRNA: 3'- gUCA--UCGCGuu-UCGCaG-CUCGUGCGU- -5' |
|||||||
8153 | 3' | -54 | NC_001978.2 | + | 22961 | 0.66 | 0.685554 |
Target: 5'- cUAGUcGCGCGucacGGGCGUCacgauGAGCGCGa- -3' miRNA: 3'- -GUCAuCGCGU----UUCGCAG-----CUCGUGCgu -5' |
|||||||
8153 | 3' | -54 | NC_001978.2 | + | 28276 | 0.66 | 0.685554 |
Target: 5'- uCAGgcGCGCGuguucGGCGUCaaGGCACGgGu -3' miRNA: 3'- -GUCauCGCGUu----UCGCAGc-UCGUGCgU- -5' |
|||||||
8153 | 3' | -54 | NC_001978.2 | + | 24450 | 0.66 | 0.674201 |
Target: 5'- cCAGggcaGGCGC--AGCGUCGGGCcCGa- -3' miRNA: 3'- -GUCa---UCGCGuuUCGCAGCUCGuGCgu -5' |
|||||||
8153 | 3' | -54 | NC_001978.2 | + | 26181 | 0.66 | 0.674201 |
Target: 5'- cCAGgauGCGCGcAGCGUCG-GCGCc-- -3' miRNA: 3'- -GUCau-CGCGUuUCGCAGCuCGUGcgu -5' |
|||||||
8153 | 3' | -54 | NC_001978.2 | + | 22339 | 0.69 | 0.483437 |
Target: 5'- cCGGUccGGCGuCGGguugccgucGGCGUCGAGCcauacGCGCAu -3' miRNA: 3'- -GUCA--UCGC-GUU---------UCGCAGCUCG-----UGCGU- -5' |
|||||||
8153 | 3' | -54 | NC_001978.2 | + | 8604 | 0.69 | 0.515788 |
Target: 5'- --aUGGCGCGAAGCaUCGGGgCACGg- -3' miRNA: 3'- gucAUCGCGUUUCGcAGCUC-GUGCgu -5' |
|||||||
8153 | 3' | -54 | NC_001978.2 | + | 7263 | 0.68 | 0.557946 |
Target: 5'- uCAGaAGCGaaccggcuccGGCGUCGAGUACGUc -3' miRNA: 3'- -GUCaUCGCguu-------UCGCAGCUCGUGCGu -5' |
|||||||
8153 | 3' | -54 | NC_001978.2 | + | 34260 | 0.67 | 0.628479 |
Target: 5'- aCAGUu-CGCAuAGUcggaGUUGGGCGCGCAc -3' miRNA: 3'- -GUCAucGCGUuUCG----CAGCUCGUGCGU- -5' |
|||||||
8153 | 3' | -54 | NC_001978.2 | + | 6408 | 0.69 | 0.494116 |
Target: 5'- uCGGgaauGCGCGAcacGUgGUCGAGCACGUAu -3' miRNA: 3'- -GUCau--CGCGUUu--CG-CAGCUCGUGCGU- -5' |
|||||||
8153 | 3' | -54 | NC_001978.2 | + | 41171 | 0.67 | 0.628479 |
Target: 5'- aGGUGGCGU--GGUGcUGAGCACaGCGc -3' miRNA: 3'- gUCAUCGCGuuUCGCaGCUCGUG-CGU- -5' |
|||||||
8153 | 3' | -54 | NC_001978.2 | + | 39793 | 0.67 | 0.594182 |
Target: 5'- uCAGUgAGCuugcCGAAGCGUCGGGCG-GCu -3' miRNA: 3'- -GUCA-UCGc---GUUUCGCAGCUCGUgCGu -5' |
|||||||
8153 | 3' | -54 | NC_001978.2 | + | 18907 | 0.69 | 0.490901 |
Target: 5'- gCAGgcucaGGCGCuccgcAGCGUCGAuagcggggaacgccGCGCGCAc -3' miRNA: 3'- -GUCa----UCGCGuu---UCGCAGCU--------------CGUGCGU- -5' |
|||||||
8153 | 3' | -54 | NC_001978.2 | + | 38878 | 0.71 | 0.365307 |
Target: 5'- ----uGUGCGAcGCGUCGAGC-CGCAu -3' miRNA: 3'- gucauCGCGUUuCGCAGCUCGuGCGU- -5' |
|||||||
8153 | 3' | -54 | NC_001978.2 | + | 31823 | 0.67 | 0.617029 |
Target: 5'- cCGGaAGC-CGGAcGCGUCGAGUGCGUc -3' miRNA: 3'- -GUCaUCGcGUUU-CGCAGCUCGUGCGu -5' |
|||||||
8153 | 3' | -54 | NC_001978.2 | + | 16803 | 0.67 | 0.615884 |
Target: 5'- cCAGUAGCGCccaggcuGAAGCacgGUCGAcGCAauggGCAg -3' miRNA: 3'- -GUCAUCGCG-------UUUCG---CAGCU-CGUg---CGU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home