miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8159 3' -58.7 NC_001978.2 + 35867 0.66 0.505342
Target:  5'- -cCUUGCCGucgucuUCGGCGUCagugagCGGAC-CCu -3'
miRNA:   3'- gaGAAUGGC------AGCCGCGGg-----GCCUGuGG- -5'
8159 3' -58.7 NC_001978.2 + 35569 0.66 0.495127
Target:  5'- gUCgaGCCGgagaCGGCGCCCCugagcgucGGCGCg -3'
miRNA:   3'- gAGaaUGGCa---GCCGCGGGGc-------CUGUGg -5'
8159 3' -58.7 NC_001978.2 + 7393 0.66 0.495127
Target:  5'- uUCgaGCCGUCGa--CCCCGGGCcgaACCa -3'
miRNA:   3'- gAGaaUGGCAGCcgcGGGGCCUG---UGG- -5'
8159 3' -58.7 NC_001978.2 + 9013 0.66 0.495127
Target:  5'- ----cGCCGUCGGCauugGCgCCGGuauCGCUg -3'
miRNA:   3'- gagaaUGGCAGCCG----CGgGGCCu--GUGG- -5'
8159 3' -58.7 NC_001978.2 + 37114 0.66 0.485008
Target:  5'- gUCUUACCcUgGGCGCCauGGG-ACCg -3'
miRNA:   3'- gAGAAUGGcAgCCGCGGggCCUgUGG- -5'
8159 3' -58.7 NC_001978.2 + 30497 0.66 0.455265
Target:  5'- ----aACCGUCGGCGUCCgCGuucucagccgacGugACCu -3'
miRNA:   3'- gagaaUGGCAGCCGCGGG-GC------------CugUGG- -5'
8159 3' -58.7 NC_001978.2 + 1743 0.67 0.435042
Target:  5'- -aCUUACCGggucgugUCGGCGgaCgCCGGACGgCa -3'
miRNA:   3'- gaGAAUGGC-------AGCCGCg-G-GGCCUGUgG- -5'
8159 3' -58.7 NC_001978.2 + 792 0.67 0.426536
Target:  5'- ---gUGCCcaGUCGcGCGCCCa-GGCGCCg -3'
miRNA:   3'- gagaAUGG--CAGC-CGCGGGgcCUGUGG- -5'
8159 3' -58.7 NC_001978.2 + 18341 0.67 0.417201
Target:  5'- -gCUUGCUGU-GGuCGCCCauGGCGCCc -3'
miRNA:   3'- gaGAAUGGCAgCC-GCGGGgcCUGUGG- -5'
8159 3' -58.7 NC_001978.2 + 28768 0.67 0.417201
Target:  5'- ----gAUUGUCGGagaCGCCCCGGAuCACa -3'
miRNA:   3'- gagaaUGGCAGCC---GCGGGGCCU-GUGg -5'
8159 3' -58.7 NC_001978.2 + 1480 0.67 0.398009
Target:  5'- cCUUcgGCCGUUGGCGCCggaagcaUCGGAC-Cg -3'
miRNA:   3'- -GAGaaUGGCAGCCGCGG-------GGCCUGuGg -5'
8159 3' -58.7 NC_001978.2 + 36733 0.68 0.38996
Target:  5'- ----aGCCGgagaCGGCGCCCCaggccguucaGGACGuCCu -3'
miRNA:   3'- gagaaUGGCa---GCCGCGGGG----------CCUGU-GG- -5'
8159 3' -58.7 NC_001978.2 + 25734 0.68 0.372458
Target:  5'- ----cGCCGUaacCGGCGucaCCCCGGAacaCGCCa -3'
miRNA:   3'- gagaaUGGCA---GCCGC---GGGGCCU---GUGG- -5'
8159 3' -58.7 NC_001978.2 + 37701 0.68 0.363909
Target:  5'- -----cCCGUCGuGCGCCCCugGGugAUCu -3'
miRNA:   3'- gagaauGGCAGC-CGCGGGG--CCugUGG- -5'
8159 3' -58.7 NC_001978.2 + 6010 0.68 0.363909
Target:  5'- gUCUUcUUGUCGaCGCCCgGGGCGCg -3'
miRNA:   3'- gAGAAuGGCAGCcGCGGGgCCUGUGg -5'
8159 3' -58.7 NC_001978.2 + 38580 0.68 0.363909
Target:  5'- -cCggGCaCGUCGGCGUUCgGGACGgCg -3'
miRNA:   3'- gaGaaUG-GCAGCCGCGGGgCCUGUgG- -5'
8159 3' -58.7 NC_001978.2 + 6091 0.69 0.323236
Target:  5'- ----gACCGUCagaaccuucGCGCCCCGGGCGUCg -3'
miRNA:   3'- gagaaUGGCAGc--------CGCGGGGCCUGUGG- -5'
8159 3' -58.7 NC_001978.2 + 19935 0.69 0.31552
Target:  5'- aUCg---CGUCGGC-CCCCGGcacgGCGCCa -3'
miRNA:   3'- gAGaaugGCAGCCGcGGGGCC----UGUGG- -5'
8159 3' -58.7 NC_001978.2 + 12505 0.7 0.293209
Target:  5'- gUCU--CCGUCGGCGuUCCCGGucggcuucACGCUg -3'
miRNA:   3'- gAGAauGGCAGCCGC-GGGGCC--------UGUGG- -5'
8159 3' -58.7 NC_001978.2 + 14376 0.7 0.286051
Target:  5'- gCUCUUACCGgcaCGaCGUCCCGcGCGCUg -3'
miRNA:   3'- -GAGAAUGGCa--GCcGCGGGGCcUGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.