Results 1 - 20 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8161 | 3' | -52.1 | NC_001978.2 | + | 6694 | 1.13 | 0.000844 |
Target: 5'- cCAACGUGACCGGCUACGUAGAAGCGCa -3' miRNA: 3'- -GUUGCACUGGCCGAUGCAUCUUCGCG- -5' |
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8161 | 3' | -52.1 | NC_001978.2 | + | 40666 | 0.74 | 0.388849 |
Target: 5'- ---aGUGACCGGCcugaGUGGGuAGCGCu -3' miRNA: 3'- guugCACUGGCCGaug-CAUCU-UCGCG- -5' |
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8161 | 3' | -52.1 | NC_001978.2 | + | 24641 | 0.73 | 0.40784 |
Target: 5'- gCAcCGUGAgCGGgUGCGUAauGGCGCa -3' miRNA: 3'- -GUuGCACUgGCCgAUGCAUcuUCGCG- -5' |
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8161 | 3' | -52.1 | NC_001978.2 | + | 24165 | 0.72 | 0.489225 |
Target: 5'- cCGGCGuUGAcuCCGGUUACGgccugGGuGAGCGCa -3' miRNA: 3'- -GUUGC-ACU--GGCCGAUGCa----UC-UUCGCG- -5' |
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8161 | 3' | -52.1 | NC_001978.2 | + | 38117 | 0.71 | 0.49994 |
Target: 5'- aGACGUGGCag---AUGUGGGAGCGCa -3' miRNA: 3'- gUUGCACUGgccgaUGCAUCUUCGCG- -5' |
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8161 | 3' | -52.1 | NC_001978.2 | + | 36545 | 0.71 | 0.520575 |
Target: 5'- gAGCGUG-UCGGCUcaugacugggucgGCGUGGcAGUGCa -3' miRNA: 3'- gUUGCACuGGCCGA-------------UGCAUCuUCGCG- -5' |
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8161 | 3' | -52.1 | NC_001978.2 | + | 25563 | 0.71 | 0.52167 |
Target: 5'- aCGGCGUGACCcGUgGCGcccAGggGCGUg -3' miRNA: 3'- -GUUGCACUGGcCGaUGCa--UCuuCGCG- -5' |
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8161 | 3' | -52.1 | NC_001978.2 | + | 33135 | 0.71 | 0.532673 |
Target: 5'- -cAUGUcGACCGGCgcgGCGuUGGGcaguAGCGCa -3' miRNA: 3'- guUGCA-CUGGCCGa--UGC-AUCU----UCGCG- -5' |
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8161 | 3' | -52.1 | NC_001978.2 | + | 30899 | 0.7 | 0.577426 |
Target: 5'- uGGCGUGACCGaCUACGggcacgguGAcgGGUGCg -3' miRNA: 3'- gUUGCACUGGCcGAUGCau------CU--UCGCG- -5' |
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8161 | 3' | -52.1 | NC_001978.2 | + | 28525 | 0.7 | 0.600129 |
Target: 5'- uGACcggGACUGGgaACGUAucGggGCGCg -3' miRNA: 3'- gUUGca-CUGGCCgaUGCAU--CuuCGCG- -5' |
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8161 | 3' | -52.1 | NC_001978.2 | + | 31509 | 0.69 | 0.622949 |
Target: 5'- aCGACGUGAaggugUGGC-GCGUAGGacacggcacGGCGCu -3' miRNA: 3'- -GUUGCACUg----GCCGaUGCAUCU---------UCGCG- -5' |
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8161 | 3' | -52.1 | NC_001978.2 | + | 39998 | 0.69 | 0.645804 |
Target: 5'- cCGACGcugacccGACCGGCccuaaguCGUgguGGggGCGCg -3' miRNA: 3'- -GUUGCa------CUGGCCGau-----GCA---UCuuCGCG- -5' |
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8161 | 3' | -52.1 | NC_001978.2 | + | 32967 | 0.69 | 0.657217 |
Target: 5'- gGGCacGACCGGCUcagugucgGCGUGGucgacguAGCGCu -3' miRNA: 3'- gUUGcaCUGGCCGA--------UGCAUCu------UCGCG- -5' |
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8161 | 3' | -52.1 | NC_001978.2 | + | 491 | 0.69 | 0.668605 |
Target: 5'- aGACGgcaAUCGGCUucACGccuGAAGCGCg -3' miRNA: 3'- gUUGCac-UGGCCGA--UGCau-CUUCGCG- -5' |
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8161 | 3' | -52.1 | NC_001978.2 | + | 39423 | 0.69 | 0.668605 |
Target: 5'- aGGCGUGGuuGG--ACGgcaGGggGCGCg -3' miRNA: 3'- gUUGCACUggCCgaUGCa--UCuuCGCG- -5' |
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8161 | 3' | -52.1 | NC_001978.2 | + | 22609 | 0.69 | 0.668605 |
Target: 5'- gCAugGUGACCGGC-ACucagcGAcGCGCc -3' miRNA: 3'- -GUugCACUGGCCGaUGcau--CUuCGCG- -5' |
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8161 | 3' | -52.1 | NC_001978.2 | + | 14222 | 0.68 | 0.686744 |
Target: 5'- gAACGUGACCGGCcuugucuucgacCGgguuGAGGCGa -3' miRNA: 3'- gUUGCACUGGCCGau----------GCau--CUUCGCg -5' |
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8161 | 3' | -52.1 | NC_001978.2 | + | 38165 | 0.68 | 0.691258 |
Target: 5'- aGGCGUGGCgCGGCUucccCGUGccGGAGCa- -3' miRNA: 3'- gUUGCACUG-GCCGAu---GCAU--CUUCGcg -5' |
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8161 | 3' | -52.1 | NC_001978.2 | + | 6741 | 0.68 | 0.691258 |
Target: 5'- -cACGuUGGuuGGCUucGCGccGGAGCGCa -3' miRNA: 3'- guUGC-ACUggCCGA--UGCauCUUCGCG- -5' |
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8161 | 3' | -52.1 | NC_001978.2 | + | 34128 | 0.68 | 0.702498 |
Target: 5'- cCGGCGUGcCCGGgUguGCGUccgccGGAGCGUg -3' miRNA: 3'- -GUUGCACuGGCCgA--UGCAu----CUUCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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