miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8161 3' -52.1 NC_001978.2 + 491 0.69 0.668605
Target:  5'- aGACGgcaAUCGGCUucACGccuGAAGCGCg -3'
miRNA:   3'- gUUGCac-UGGCCGA--UGCau-CUUCGCG- -5'
8161 3' -52.1 NC_001978.2 + 4523 0.66 0.827973
Target:  5'- gCAGCGUG-CCGGaagACGUgcgccccaguagGGAAcGCGUg -3'
miRNA:   3'- -GUUGCACuGGCCga-UGCA------------UCUU-CGCG- -5'
8161 3' -52.1 NC_001978.2 + 6562 0.66 0.837267
Target:  5'- cCAACGUG-CCGGgUgACGUuc-AGUGCa -3'
miRNA:   3'- -GUUGCACuGGCCgA-UGCAucuUCGCG- -5'
8161 3' -52.1 NC_001978.2 + 6694 1.13 0.000844
Target:  5'- cCAACGUGACCGGCUACGUAGAAGCGCa -3'
miRNA:   3'- -GUUGCACUGGCCGAUGCAUCUUCGCG- -5'
8161 3' -52.1 NC_001978.2 + 6741 0.68 0.691258
Target:  5'- -cACGuUGGuuGGCUucGCGccGGAGCGCa -3'
miRNA:   3'- guUGC-ACUggCCGA--UGCauCUUCGCG- -5'
8161 3' -52.1 NC_001978.2 + 6917 0.66 0.808729
Target:  5'- --cCGUGugCGGgUGCGcGGucGCGUc -3'
miRNA:   3'- guuGCACugGCCgAUGCaUCuuCGCG- -5'
8161 3' -52.1 NC_001978.2 + 10868 0.67 0.757336
Target:  5'- cCAugGgugGACCGGCguccGgGUGGAcccguguuggcgAGCGUg -3'
miRNA:   3'- -GUugCa--CUGGCCGa---UgCAUCU------------UCGCG- -5'
8161 3' -52.1 NC_001978.2 + 14222 0.68 0.686744
Target:  5'- gAACGUGACCGGCcuugucuucgacCGgguuGAGGCGa -3'
miRNA:   3'- gUUGCACUGGCCGau----------GCau--CUUCGCg -5'
8161 3' -52.1 NC_001978.2 + 14930 0.66 0.827973
Target:  5'- -cGCGUGcguACCGGCacgggcaACGUAu-GGCGCg -3'
miRNA:   3'- guUGCAC---UGGCCGa------UGCAUcuUCGCG- -5'
8161 3' -52.1 NC_001978.2 + 15405 0.66 0.808729
Target:  5'- gAAUcUGACCGGCguCGUuGgcGCGCg -3'
miRNA:   3'- gUUGcACUGGCCGauGCAuCuuCGCG- -5'
8161 3' -52.1 NC_001978.2 + 17285 0.67 0.778396
Target:  5'- gGGCGUGaACUGGUUcCGgaacaAGggGCGUu -3'
miRNA:   3'- gUUGCAC-UGGCCGAuGCa----UCuuCGCG- -5'
8161 3' -52.1 NC_001978.2 + 18589 0.66 0.798802
Target:  5'- -cGCGUcuCCGGCaGCGUuacGGAuaucAGCGCg -3'
miRNA:   3'- guUGCAcuGGCCGaUGCA---UCU----UCGCG- -5'
8161 3' -52.1 NC_001978.2 + 20584 0.66 0.837267
Target:  5'- -----cGACCGGuCUgcccgaccugACGgcGGAGCGCa -3'
miRNA:   3'- guugcaCUGGCC-GA----------UGCauCUUCGCG- -5'
8161 3' -52.1 NC_001978.2 + 20677 0.66 0.837267
Target:  5'- aCGACGuUGAgCGGCa----GGggGCGCa -3'
miRNA:   3'- -GUUGC-ACUgGCCGaugcaUCuuCGCG- -5'
8161 3' -52.1 NC_001978.2 + 21911 0.67 0.735725
Target:  5'- gGACGauuucaCGGUUcucaggguggACGUAGAAGCGCg -3'
miRNA:   3'- gUUGCacug--GCCGA----------UGCAUCUUCGCG- -5'
8161 3' -52.1 NC_001978.2 + 22609 0.69 0.668605
Target:  5'- gCAugGUGACCGGC-ACucagcGAcGCGCc -3'
miRNA:   3'- -GUugCACUGGCCGaUGcau--CUuCGCG- -5'
8161 3' -52.1 NC_001978.2 + 24165 0.72 0.489225
Target:  5'- cCGGCGuUGAcuCCGGUUACGgccugGGuGAGCGCa -3'
miRNA:   3'- -GUUGC-ACU--GGCCGAUGCa----UC-UUCGCG- -5'
8161 3' -52.1 NC_001978.2 + 24641 0.73 0.40784
Target:  5'- gCAcCGUGAgCGGgUGCGUAauGGCGCa -3'
miRNA:   3'- -GUuGCACUgGCCgAUGCAUcuUCGCG- -5'
8161 3' -52.1 NC_001978.2 + 25563 0.71 0.52167
Target:  5'- aCGGCGUGACCcGUgGCGcccAGggGCGUg -3'
miRNA:   3'- -GUUGCACUGGcCGaUGCa--UCuuCGCG- -5'
8161 3' -52.1 NC_001978.2 + 27519 0.68 0.724745
Target:  5'- --cCGgGACCGGUaGCGgcGGcaGGCGCg -3'
miRNA:   3'- guuGCaCUGGCCGaUGCauCU--UCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.