miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8161 3' -52.1 NC_001978.2 + 15405 0.66 0.808729
Target:  5'- gAAUcUGACCGGCguCGUuGgcGCGCg -3'
miRNA:   3'- gUUGcACUGGCCGauGCAuCuuCGCG- -5'
8161 3' -52.1 NC_001978.2 + 491 0.69 0.668605
Target:  5'- aGACGgcaAUCGGCUucACGccuGAAGCGCg -3'
miRNA:   3'- gUUGCac-UGGCCGA--UGCau-CUUCGCG- -5'
8161 3' -52.1 NC_001978.2 + 14222 0.68 0.686744
Target:  5'- gAACGUGACCGGCcuugucuucgacCGgguuGAGGCGa -3'
miRNA:   3'- gUUGCACUGGCCGau----------GCau--CUUCGCg -5'
8161 3' -52.1 NC_001978.2 + 38165 0.68 0.691258
Target:  5'- aGGCGUGGCgCGGCUucccCGUGccGGAGCa- -3'
miRNA:   3'- gUUGCACUG-GCCGAu---GCAU--CUUCGcg -5'
8161 3' -52.1 NC_001978.2 + 34128 0.68 0.702498
Target:  5'- cCGGCGUGcCCGGgUguGCGUccgccGGAGCGUg -3'
miRNA:   3'- -GUUGCACuGGCCgA--UGCAu----CUUCGCG- -5'
8161 3' -52.1 NC_001978.2 + 10868 0.67 0.757336
Target:  5'- cCAugGgugGACCGGCguccGgGUGGAcccguguuggcgAGCGUg -3'
miRNA:   3'- -GUugCa--CUGGCCGa---UgCAUCU------------UCGCG- -5'
8161 3' -52.1 NC_001978.2 + 17285 0.67 0.778396
Target:  5'- gGGCGUGaACUGGUUcCGgaacaAGggGCGUu -3'
miRNA:   3'- gUUGCAC-UGGCCGAuGCa----UCuuCGCG- -5'
8161 3' -52.1 NC_001978.2 + 18589 0.66 0.798802
Target:  5'- -cGCGUcuCCGGCaGCGUuacGGAuaucAGCGCg -3'
miRNA:   3'- guUGCAcuGGCCGaUGCA---UCU----UCGCG- -5'
8161 3' -52.1 NC_001978.2 + 6917 0.66 0.808729
Target:  5'- --cCGUGugCGGgUGCGcGGucGCGUc -3'
miRNA:   3'- guuGCACugGCCgAUGCaUCuuCGCG- -5'
8161 3' -52.1 NC_001978.2 + 39423 0.69 0.668605
Target:  5'- aGGCGUGGuuGG--ACGgcaGGggGCGCg -3'
miRNA:   3'- gUUGCACUggCCgaUGCa--UCuuCGCG- -5'
8161 3' -52.1 NC_001978.2 + 22609 0.69 0.668605
Target:  5'- gCAugGUGACCGGC-ACucagcGAcGCGCc -3'
miRNA:   3'- -GUugCACUGGCCGaUGcau--CUuCGCG- -5'
8161 3' -52.1 NC_001978.2 + 39998 0.69 0.645804
Target:  5'- cCGACGcugacccGACCGGCccuaaguCGUgguGGggGCGCg -3'
miRNA:   3'- -GUUGCa------CUGGCCGau-----GCA---UCuuCGCG- -5'
8161 3' -52.1 NC_001978.2 + 24641 0.73 0.40784
Target:  5'- gCAcCGUGAgCGGgUGCGUAauGGCGCa -3'
miRNA:   3'- -GUuGCACUgGCCgAUGCAUcuUCGCG- -5'
8161 3' -52.1 NC_001978.2 + 24165 0.72 0.489225
Target:  5'- cCGGCGuUGAcuCCGGUUACGgccugGGuGAGCGCa -3'
miRNA:   3'- -GUUGC-ACU--GGCCGAUGCa----UC-UUCGCG- -5'
8161 3' -52.1 NC_001978.2 + 38117 0.71 0.49994
Target:  5'- aGACGUGGCag---AUGUGGGAGCGCa -3'
miRNA:   3'- gUUGCACUGgccgaUGCAUCUUCGCG- -5'
8161 3' -52.1 NC_001978.2 + 36545 0.71 0.520575
Target:  5'- gAGCGUG-UCGGCUcaugacugggucgGCGUGGcAGUGCa -3'
miRNA:   3'- gUUGCACuGGCCGA-------------UGCAUCuUCGCG- -5'
8161 3' -52.1 NC_001978.2 + 25563 0.71 0.52167
Target:  5'- aCGGCGUGACCcGUgGCGcccAGggGCGUg -3'
miRNA:   3'- -GUUGCACUGGcCGaUGCa--UCuuCGCG- -5'
8161 3' -52.1 NC_001978.2 + 30899 0.7 0.577426
Target:  5'- uGGCGUGACCGaCUACGggcacgguGAcgGGUGCg -3'
miRNA:   3'- gUUGCACUGGCcGAUGCau------CU--UCGCG- -5'
8161 3' -52.1 NC_001978.2 + 28525 0.7 0.600129
Target:  5'- uGACcggGACUGGgaACGUAucGggGCGCg -3'
miRNA:   3'- gUUGca-CUGGCCgaUGCAU--CuuCGCG- -5'
8161 3' -52.1 NC_001978.2 + 31509 0.69 0.622949
Target:  5'- aCGACGUGAaggugUGGC-GCGUAGGacacggcacGGCGCu -3'
miRNA:   3'- -GUUGCACUg----GCCGaUGCAUCU---------UCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.