miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8161 5' -58 NC_001978.2 + 6729 1.1 0.000341
Target:  5'- gUCACGACGCCGGGCAAUCCGGUCGACg -3'
miRNA:   3'- -AGUGCUGCGGCCCGUUAGGCCAGCUG- -5'
8161 5' -58 NC_001978.2 + 35910 0.76 0.119374
Target:  5'- --cCGACGUCGGGCAAgggaaGGUCGGCg -3'
miRNA:   3'- aguGCUGCGGCCCGUUagg--CCAGCUG- -5'
8161 5' -58 NC_001978.2 + 33124 0.74 0.157327
Target:  5'- gCGCGGCGuuGGGCAGUagcgcaCGGgCGGCu -3'
miRNA:   3'- aGUGCUGCggCCCGUUAg-----GCCaGCUG- -5'
8161 5' -58 NC_001978.2 + 32334 0.73 0.200476
Target:  5'- gUC-CGucCGCUGGGCGucgugacCCGGUCGACg -3'
miRNA:   3'- -AGuGCu-GCGGCCCGUua-----GGCCAGCUG- -5'
8161 5' -58 NC_001978.2 + 9807 0.72 0.21137
Target:  5'- ---aGACGCUGGGCAa---GGUCGACg -3'
miRNA:   3'- agugCUGCGGCCCGUuaggCCAGCUG- -5'
8161 5' -58 NC_001978.2 + 23874 0.72 0.217005
Target:  5'- -gGCGACGCCGGGuCGAgcgcugCCacuaGUCGGCa -3'
miRNA:   3'- agUGCUGCGGCCC-GUUa-----GGc---CAGCUG- -5'
8161 5' -58 NC_001978.2 + 5368 0.72 0.228662
Target:  5'- aUCACGG-GUCGGGCGAccgCCGGgauugUCGGCg -3'
miRNA:   3'- -AGUGCUgCGGCCCGUUa--GGCC-----AGCUG- -5'
8161 5' -58 NC_001978.2 + 32063 0.72 0.231056
Target:  5'- gUCGuCGGaGCCGGGCAAgaucaguauugccguUCCGGcCGACc -3'
miRNA:   3'- -AGU-GCUgCGGCCCGUU---------------AGGCCaGCUG- -5'
8161 5' -58 NC_001978.2 + 25650 0.71 0.240844
Target:  5'- gCugGGCGCCGuauGGCGuguUCCGGggUGACg -3'
miRNA:   3'- aGugCUGCGGC---CCGUu--AGGCCa-GCUG- -5'
8161 5' -58 NC_001978.2 + 3163 0.71 0.240844
Target:  5'- aCGCuGA-GCCGGGCGGUaugggCCGGaUCGACa -3'
miRNA:   3'- aGUG-CUgCGGCCCGUUA-----GGCC-AGCUG- -5'
8161 5' -58 NC_001978.2 + 14562 0.71 0.247135
Target:  5'- gUC-CGGCGUCGGGCcuUCCGGUaaCGGu -3'
miRNA:   3'- -AGuGCUGCGGCCCGuuAGGCCA--GCUg -5'
8161 5' -58 NC_001978.2 + 25485 0.71 0.253562
Target:  5'- -gGCGACGUCGaGCccGAaCCGGUCGGCg -3'
miRNA:   3'- agUGCUGCGGCcCG--UUaGGCCAGCUG- -5'
8161 5' -58 NC_001978.2 + 30048 0.71 0.260126
Target:  5'- aUCACuucGCGCUcaGcGGCAAgCCGGUCGGCa -3'
miRNA:   3'- -AGUGc--UGCGG--C-CCGUUaGGCCAGCUG- -5'
8161 5' -58 NC_001978.2 + 38571 0.7 0.302436
Target:  5'- -aGCGaaGCGCCGGGCAcgUCGGcguUCGGg -3'
miRNA:   3'- agUGC--UGCGGCCCGUuaGGCC---AGCUg -5'
8161 5' -58 NC_001978.2 + 35643 0.7 0.302436
Target:  5'- gCGcCGACGCUcagGGGCGccgucUCCGGcUCGACa -3'
miRNA:   3'- aGU-GCUGCGG---CCCGUu----AGGCC-AGCUG- -5'
8161 5' -58 NC_001978.2 + 30825 0.7 0.316896
Target:  5'- gUCACGAagGUCGucGGCAAcuuccccUUCGGUCGACg -3'
miRNA:   3'- -AGUGCUg-CGGC--CCGUU-------AGGCCAGCUG- -5'
8161 5' -58 NC_001978.2 + 14338 0.69 0.333477
Target:  5'- uUCGCuGCGCCcGGUAAUgagCCGGUCGGu -3'
miRNA:   3'- -AGUGcUGCGGcCCGUUA---GGCCAGCUg -5'
8161 5' -58 NC_001978.2 + 28222 0.69 0.333477
Target:  5'- aCACGcGCGCCuGaGC-AUCCGGcCGACg -3'
miRNA:   3'- aGUGC-UGCGGcC-CGuUAGGCCaGCUG- -5'
8161 5' -58 NC_001978.2 + 22336 0.68 0.366791
Target:  5'- gUC-CGGCGUCGGGUug-CC-GUCGGCg -3'
miRNA:   3'- -AGuGCUGCGGCCCGuuaGGcCAGCUG- -5'
8161 5' -58 NC_001978.2 + 29102 0.68 0.374596
Target:  5'- -gGCGAcCGCaCGGGCAAUCuccgcuuCGGUCG-Cu -3'
miRNA:   3'- agUGCU-GCG-GCCCGUUAG-------GCCAGCuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.