miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8161 5' -58 NC_001978.2 + 2009 0.66 0.520771
Target:  5'- --cCGAaGCUGGGUGAgaCGGUCGACc -3'
miRNA:   3'- aguGCUgCGGCCCGUUagGCCAGCUG- -5'
8161 5' -58 NC_001978.2 + 2094 0.67 0.439969
Target:  5'- cCAC-ACGuCCGGGuCAAggUGGUCGACc -3'
miRNA:   3'- aGUGcUGC-GGCCC-GUUagGCCAGCUG- -5'
8161 5' -58 NC_001978.2 + 2581 0.66 0.531299
Target:  5'- cCACGACGgcaaCCcGGC-GUUgGGUCGGCa -3'
miRNA:   3'- aGUGCUGC----GGcCCGuUAGgCCAGCUG- -5'
8161 5' -58 NC_001978.2 + 2982 0.68 0.402326
Target:  5'- cCugGGCGCCGuucGGCu-UCCGG-CGAg -3'
miRNA:   3'- aGugCUGCGGC---CCGuuAGGCCaGCUg -5'
8161 5' -58 NC_001978.2 + 3163 0.71 0.240844
Target:  5'- aCGCuGA-GCCGGGCGGUaugggCCGGaUCGACa -3'
miRNA:   3'- aGUG-CUgCGGCCCGUUA-----GGCC-AGCUG- -5'
8161 5' -58 NC_001978.2 + 3541 0.67 0.44969
Target:  5'- gCGCcAUGCCGGGCGcUgUGGUUGAg -3'
miRNA:   3'- aGUGcUGCGGCCCGUuAgGCCAGCUg -5'
8161 5' -58 NC_001978.2 + 4348 0.68 0.37547
Target:  5'- gUCACGAC-CUGGGCGGcuUCCGGgaaCG-Ca -3'
miRNA:   3'- -AGUGCUGcGGCCCGUU--AGGCCa--GCuG- -5'
8161 5' -58 NC_001978.2 + 5152 0.66 0.520771
Target:  5'- -gACGACGCCguucuucgugcGGGCAAcCUGGgugaGGCa -3'
miRNA:   3'- agUGCUGCGG-----------CCCGUUaGGCCag--CUG- -5'
8161 5' -58 NC_001978.2 + 5368 0.72 0.228662
Target:  5'- aUCACGG-GUCGGGCGAccgCCGGgauugUCGGCg -3'
miRNA:   3'- -AGUGCUgCGGCCCGUUa--GGCC-----AGCUG- -5'
8161 5' -58 NC_001978.2 + 5918 0.66 0.531299
Target:  5'- uUCGCuuCGCCGGuuCGcUCCGuGUCGACc -3'
miRNA:   3'- -AGUGcuGCGGCCc-GUuAGGC-CAGCUG- -5'
8161 5' -58 NC_001978.2 + 6729 1.1 0.000341
Target:  5'- gUCACGACGCCGGGCAAUCCGGUCGACg -3'
miRNA:   3'- -AGUGCUGCGGCCCGUUAGGCCAGCUG- -5'
8161 5' -58 NC_001978.2 + 9269 0.68 0.393239
Target:  5'- gUCGCGACGgucCUGGGCGacgaaGUUgGGcCGACg -3'
miRNA:   3'- -AGUGCUGC---GGCCCGU-----UAGgCCaGCUG- -5'
8161 5' -58 NC_001978.2 + 9807 0.72 0.21137
Target:  5'- ---aGACGCUGGGCAa---GGUCGACg -3'
miRNA:   3'- agugCUGCGGCCCGUuaggCCAGCUG- -5'
8161 5' -58 NC_001978.2 + 11440 0.67 0.459527
Target:  5'- uUCGUGAUgGCaCGGGCAcgCaagCGGUCGGCg -3'
miRNA:   3'- -AGUGCUG-CG-GCCCGUuaG---GCCAGCUG- -5'
8161 5' -58 NC_001978.2 + 11886 0.66 0.520771
Target:  5'- gUAUGGC-CCGGGUGAUcaCCGGUugCGGCu -3'
miRNA:   3'- aGUGCUGcGGCCCGUUA--GGCCA--GCUG- -5'
8161 5' -58 NC_001978.2 + 12844 0.67 0.459527
Target:  5'- uUC-UGA-GUCGGGCGcguaaugCCGGUCGGCa -3'
miRNA:   3'- -AGuGCUgCGGCCCGUua-----GGCCAGCUG- -5'
8161 5' -58 NC_001978.2 + 14338 0.69 0.333477
Target:  5'- uUCGCuGCGCCcGGUAAUgagCCGGUCGGu -3'
miRNA:   3'- -AGUGcUGCGGcCCGUUA---GGCCAGCUg -5'
8161 5' -58 NC_001978.2 + 14396 0.68 0.384286
Target:  5'- cCGCG-CGCUGGGCAcgguuuacGUCC-GUUGGCu -3'
miRNA:   3'- aGUGCuGCGGCCCGU--------UAGGcCAGCUG- -5'
8161 5' -58 NC_001978.2 + 14562 0.71 0.247135
Target:  5'- gUC-CGGCGUCGGGCcuUCCGGUaaCGGu -3'
miRNA:   3'- -AGuGCUGCGGCCCGuuAGGCCA--GCUg -5'
8161 5' -58 NC_001978.2 + 14704 0.68 0.37547
Target:  5'- aUC-CGAUGCCGGu--AUUCGGUCGAg -3'
miRNA:   3'- -AGuGCUGCGGCCcguUAGGCCAGCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.