miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8161 5' -58 NC_001978.2 + 24833 0.67 0.469478
Target:  5'- -uGCGGCGCUgGGGCua-CCGGUgcgccuacugCGACg -3'
miRNA:   3'- agUGCUGCGG-CCCGuuaGGCCA----------GCUG- -5'
8161 5' -58 NC_001978.2 + 19682 0.68 0.393239
Target:  5'- cUCGCG-CGCUGGGCAuggaCUGGgccgaagcgcUCGACu -3'
miRNA:   3'- -AGUGCuGCGGCCCGUua--GGCC----------AGCUG- -5'
8161 5' -58 NC_001978.2 + 2982 0.68 0.402326
Target:  5'- cCugGGCGCCGuucGGCu-UCCGG-CGAg -3'
miRNA:   3'- aGugCUGCGGC---CCGuuAGGCCaGCUg -5'
8161 5' -58 NC_001978.2 + 31792 0.67 0.429416
Target:  5'- aUACGACGUucccgacUGGGCGGcUCGcGUCGGCa -3'
miRNA:   3'- aGUGCUGCG-------GCCCGUUaGGC-CAGCUG- -5'
8161 5' -58 NC_001978.2 + 15738 0.67 0.439969
Target:  5'- -gGCGAaGUCGGGCGgcGUgUGGUCGAa -3'
miRNA:   3'- agUGCUgCGGCCCGU--UAgGCCAGCUg -5'
8161 5' -58 NC_001978.2 + 3541 0.67 0.44969
Target:  5'- gCGCcAUGCCGGGCGcUgUGGUUGAg -3'
miRNA:   3'- aGUGcUGCGGCCCGUuAgGCCAGCUg -5'
8161 5' -58 NC_001978.2 + 17393 0.67 0.44969
Target:  5'- gUACGACGCUGacuauGCGuacaCGGUCGGCg -3'
miRNA:   3'- aGUGCUGCGGCc----CGUuag-GCCAGCUG- -5'
8161 5' -58 NC_001978.2 + 26001 0.67 0.459527
Target:  5'- gCACGACGCCGu-CAAgUCGGcUCGACc -3'
miRNA:   3'- aGUGCUGCGGCccGUUaGGCC-AGCUG- -5'
8161 5' -58 NC_001978.2 + 11440 0.67 0.459527
Target:  5'- uUCGUGAUgGCaCGGGCAcgCaagCGGUCGGCg -3'
miRNA:   3'- -AGUGCUG-CG-GCCCGUuaG---GCCAGCUG- -5'
8161 5' -58 NC_001978.2 + 9269 0.68 0.393239
Target:  5'- gUCGCGACGgucCUGGGCGacgaaGUUgGGcCGACg -3'
miRNA:   3'- -AGUGCUGC---GGCCCGU-----UAGgCCaGCUG- -5'
8161 5' -58 NC_001978.2 + 14396 0.68 0.384286
Target:  5'- cCGCG-CGCUGGGCAcgguuuacGUCC-GUUGGCu -3'
miRNA:   3'- aGUGCuGCGGCCCGU--------UAGGcCAGCUG- -5'
8161 5' -58 NC_001978.2 + 25971 0.68 0.37547
Target:  5'- gCGCGAC-CCGGGCAAguuccCCaGcCGACu -3'
miRNA:   3'- aGUGCUGcGGCCCGUUa----GGcCaGCUG- -5'
8161 5' -58 NC_001978.2 + 9807 0.72 0.21137
Target:  5'- ---aGACGCUGGGCAa---GGUCGACg -3'
miRNA:   3'- agugCUGCGGCCCGUuaggCCAGCUG- -5'
8161 5' -58 NC_001978.2 + 5368 0.72 0.228662
Target:  5'- aUCACGG-GUCGGGCGAccgCCGGgauugUCGGCg -3'
miRNA:   3'- -AGUGCUgCGGCCCGUUa--GGCC-----AGCUG- -5'
8161 5' -58 NC_001978.2 + 32063 0.72 0.231056
Target:  5'- gUCGuCGGaGCCGGGCAAgaucaguauugccguUCCGGcCGACc -3'
miRNA:   3'- -AGU-GCUgCGGCCCGUU---------------AGGCCaGCUG- -5'
8161 5' -58 NC_001978.2 + 3163 0.71 0.240844
Target:  5'- aCGCuGA-GCCGGGCGGUaugggCCGGaUCGACa -3'
miRNA:   3'- aGUG-CUgCGGCCCGUUA-----GGCC-AGCUG- -5'
8161 5' -58 NC_001978.2 + 25650 0.71 0.240844
Target:  5'- gCugGGCGCCGuauGGCGuguUCCGGggUGACg -3'
miRNA:   3'- aGugCUGCGGC---CCGUu--AGGCCa-GCUG- -5'
8161 5' -58 NC_001978.2 + 38571 0.7 0.302436
Target:  5'- -aGCGaaGCGCCGGGCAcgUCGGcguUCGGg -3'
miRNA:   3'- agUGC--UGCGGCCCGUuaGGCC---AGCUg -5'
8161 5' -58 NC_001978.2 + 28222 0.69 0.333477
Target:  5'- aCACGcGCGCCuGaGC-AUCCGGcCGACg -3'
miRNA:   3'- aGUGC-UGCGGcC-CGuUAGGCCaGCUG- -5'
8161 5' -58 NC_001978.2 + 4348 0.68 0.37547
Target:  5'- gUCACGAC-CUGGGCGGcuUCCGGgaaCG-Ca -3'
miRNA:   3'- -AGUGCUGcGGCCCGUU--AGGCCa--GCuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.