Results 21 - 24 of 24 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8164 | 3' | -59.6 | NC_001978.2 | + | 16712 | 0.72 | 0.165956 |
Target: 5'- cGCCGUUCCGcUGcccauUGCgUCGaccgugcuucaGCCUGGGCg -3' miRNA: 3'- aCGGCAAGGC-AC-----ACG-AGC-----------UGGGCCCG- -5' |
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8164 | 3' | -59.6 | NC_001978.2 | + | 40637 | 0.75 | 0.104131 |
Target: 5'- cGCCGUUCCuuagcgGUGCUUGAUgCGuGGCg -3' miRNA: 3'- aCGGCAAGGca----CACGAGCUGgGC-CCG- -5' |
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8164 | 3' | -59.6 | NC_001978.2 | + | 39565 | 0.76 | 0.095757 |
Target: 5'- cUGCCGUcgCCGgaagGUGgUCGACCCguccgcaccuGGGCa -3' miRNA: 3'- -ACGGCAa-GGCa---CACgAGCUGGG----------CCCG- -5' |
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8164 | 3' | -59.6 | NC_001978.2 | + | 7879 | 1.11 | 0.000189 |
Target: 5'- cUGCCGUUCCGUGUGCUCGACCCGGGCg -3' miRNA: 3'- -ACGGCAAGGCACACGAGCUGGGCCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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