miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8170 3' -54.8 NC_001978.2 + 11466 1.13 0.000415
Target:  5'- gUCGGCGCCGCUCGACCUGAACUUUGCg -3'
miRNA:   3'- -AGCCGCGGCGAGCUGGACUUGAAACG- -5'
8170 3' -54.8 NC_001978.2 + 26165 0.8 0.09378
Target:  5'- gUCGGCGCCcugaguGCUCGAcaCCUGAACg--GCg -3'
miRNA:   3'- -AGCCGCGG------CGAGCU--GGACUUGaaaCG- -5'
8170 3' -54.8 NC_001978.2 + 29156 0.77 0.16594
Target:  5'- gUCGGCgccuGCCGCUCGACCgGAACcguacguaUGCc -3'
miRNA:   3'- -AGCCG----CGGCGAGCUGGaCUUGaa------ACG- -5'
8170 3' -54.8 NC_001978.2 + 9665 0.76 0.175424
Target:  5'- cUCGGCGCCGUUCaGCCccaUGGACUUguacGCc -3'
miRNA:   3'- -AGCCGCGGCGAGcUGG---ACUUGAAa---CG- -5'
8170 3' -54.8 NC_001978.2 + 8500 0.74 0.262918
Target:  5'- aCGGgucaGCCGCUCGAcucCCUGAACaagGCc -3'
miRNA:   3'- aGCCg---CGGCGAGCU---GGACUUGaaaCG- -5'
8170 3' -54.8 NC_001978.2 + 25575 0.73 0.269863
Target:  5'- gUGGCGCCcagggGCgUGACCUGAGCg--GCa -3'
miRNA:   3'- aGCCGCGG-----CGaGCUGGACUUGaaaCG- -5'
8170 3' -54.8 NC_001978.2 + 9276 0.72 0.314645
Target:  5'- gUCGGcCGUCGCUcCGGCCgGAACgagccccugUUGCc -3'
miRNA:   3'- -AGCC-GCGGCGA-GCUGGaCUUGa--------AACG- -5'
8170 3' -54.8 NC_001978.2 + 32471 0.72 0.339061
Target:  5'- aCGGUGCCGaCUCGACCgacugacGAcCUgggGCg -3'
miRNA:   3'- aGCCGCGGC-GAGCUGGa------CUuGAaa-CG- -5'
8170 3' -54.8 NC_001978.2 + 26053 0.72 0.3475
Target:  5'- aCGGCGUCGUgcagUCGGCUgggGAACU-UGCc -3'
miRNA:   3'- aGCCGCGGCG----AGCUGGa--CUUGAaACG- -5'
8170 3' -54.8 NC_001978.2 + 18381 0.71 0.364823
Target:  5'- gUCGGCGUCGCUaCGGCCgugaagccGGACUUcccggGUa -3'
miRNA:   3'- -AGCCGCGGCGA-GCUGGa-------CUUGAAa----CG- -5'
8170 3' -54.8 NC_001978.2 + 4089 0.71 0.364823
Target:  5'- -gGGUGCCGCUgaACCUGGGCgaagucgGCg -3'
miRNA:   3'- agCCGCGGCGAgcUGGACUUGaaa----CG- -5'
8170 3' -54.8 NC_001978.2 + 34697 0.71 0.382735
Target:  5'- gUCGGCGUCgGCUCGaACCcGGcaaGCUggGCg -3'
miRNA:   3'- -AGCCGCGG-CGAGC-UGGaCU---UGAaaCG- -5'
8170 3' -54.8 NC_001978.2 + 33754 0.7 0.401222
Target:  5'- gUCGG-GUCGCUCGACCgUGAAg---GCg -3'
miRNA:   3'- -AGCCgCGGCGAGCUGG-ACUUgaaaCG- -5'
8170 3' -54.8 NC_001978.2 + 23824 0.69 0.480508
Target:  5'- cCGGCGUCGC-CGgaaGCCUGGGCacacaccaUGCg -3'
miRNA:   3'- aGCCGCGGCGaGC---UGGACUUGaa------ACG- -5'
8170 3' -54.8 NC_001978.2 + 8653 0.69 0.501514
Target:  5'- gUCGGCGg-GCUCGAUCUcaggGAACU-UGCg -3'
miRNA:   3'- -AGCCGCggCGAGCUGGA----CUUGAaACG- -5'
8170 3' -54.8 NC_001978.2 + 7997 0.69 0.501514
Target:  5'- cCGGCGUUccggGCUCGACguacgUGAGCUugaUUGCg -3'
miRNA:   3'- aGCCGCGG----CGAGCUGg----ACUUGA---AACG- -5'
8170 3' -54.8 NC_001978.2 + 28108 0.69 0.501514
Target:  5'- cCGGCGCCGacgggUCGACguagaacgcaCUGAGCg--GCu -3'
miRNA:   3'- aGCCGCGGCg----AGCUG----------GACUUGaaaCG- -5'
8170 3' -54.8 NC_001978.2 + 21237 0.68 0.530486
Target:  5'- uUCGcGCuGCCGCcgacgcguucgaccUUGACCUGAGCgc-GCu -3'
miRNA:   3'- -AGC-CG-CGGCG--------------AGCUGGACUUGaaaCG- -5'
8170 3' -54.8 NC_001978.2 + 27113 0.68 0.533744
Target:  5'- gUCGGCGg-GCauugUGGCCUGGGCggUGCg -3'
miRNA:   3'- -AGCCGCggCGa---GCUGGACUUGaaACG- -5'
8170 3' -54.8 NC_001978.2 + 11653 0.68 0.554535
Target:  5'- cCGGCGCCGgaCGACCcGGuaagccgcuucACUcaguacggcagcgUUGCg -3'
miRNA:   3'- aGCCGCGGCgaGCUGGaCU-----------UGA-------------AACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.