Results 1 - 20 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8170 | 3' | -54.8 | NC_001978.2 | + | 23670 | 0.66 | 0.645041 |
Target: 5'- gUGGCGCUguGCUCGccaaucucgaACUUGAGCU-UGUg -3' miRNA: 3'- aGCCGCGG--CGAGC----------UGGACUUGAaACG- -5' |
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8170 | 3' | -54.8 | NC_001978.2 | + | 35001 | 0.68 | 0.555636 |
Target: 5'- cUCaGUGCCGUUCGAUCUGucCUUgucUGUc -3' miRNA: 3'- -AGcCGCGGCGAGCUGGACuuGAA---ACG- -5' |
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8170 | 3' | -54.8 | NC_001978.2 | + | 21616 | 0.68 | 0.566681 |
Target: 5'- aCaGCGCCGCacagcggaUGACCUGGGCUgaGUg -3' miRNA: 3'- aGcCGCGGCGa-------GCUGGACUUGAaaCG- -5' |
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8170 | 3' | -54.8 | NC_001978.2 | + | 16707 | 0.67 | 0.588929 |
Target: 5'- gUCGGCGCCGUUCcGCUgcc-CaUUGCg -3' miRNA: 3'- -AGCCGCGGCGAGcUGGacuuGaAACG- -5' |
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8170 | 3' | -54.8 | NC_001978.2 | + | 23221 | 0.67 | 0.588929 |
Target: 5'- gUGGCGUauCUCGACCggcGAACaguccgUUGCg -3' miRNA: 3'- aGCCGCGgcGAGCUGGa--CUUGa-----AACG- -5' |
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8170 | 3' | -54.8 | NC_001978.2 | + | 40896 | 0.67 | 0.611327 |
Target: 5'- -gGGUGCgUGCUCGAC----GCUUUGCg -3' miRNA: 3'- agCCGCG-GCGAGCUGgacuUGAAACG- -5' |
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8170 | 3' | -54.8 | NC_001978.2 | + | 28057 | 0.67 | 0.620312 |
Target: 5'- gUCGGCGCCGgacacucagggCGACCU-AACg--GCg -3' miRNA: 3'- -AGCCGCGGCga---------GCUGGAcUUGaaaCG- -5' |
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8170 | 3' | -54.8 | NC_001978.2 | + | 2291 | 0.67 | 0.62256 |
Target: 5'- gUGGCuuGCCGCauucgCGACCUGAAgg-UGUu -3' miRNA: 3'- aGCCG--CGGCGa----GCUGGACUUgaaACG- -5' |
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8170 | 3' | -54.8 | NC_001978.2 | + | 35994 | 0.66 | 0.633801 |
Target: 5'- cCGGagacuGCCGC-CGACCcGGGCguugugUGCg -3' miRNA: 3'- aGCCg----CGGCGaGCUGGaCUUGaa----ACG- -5' |
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8170 | 3' | -54.8 | NC_001978.2 | + | 11653 | 0.68 | 0.554535 |
Target: 5'- cCGGCGCCGgaCGACCcGGuaagccgcuucACUcaguacggcagcgUUGCg -3' miRNA: 3'- aGCCGCGGCgaGCUGGaCU-----------UGA-------------AACG- -5' |
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8170 | 3' | -54.8 | NC_001978.2 | + | 27113 | 0.68 | 0.533744 |
Target: 5'- gUCGGCGg-GCauugUGGCCUGGGCggUGCg -3' miRNA: 3'- -AGCCGCggCGa---GCUGGACUUGaaACG- -5' |
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8170 | 3' | -54.8 | NC_001978.2 | + | 21237 | 0.68 | 0.530486 |
Target: 5'- uUCGcGCuGCCGCcgacgcguucgaccUUGACCUGAGCgc-GCu -3' miRNA: 3'- -AGC-CG-CGGCG--------------AGCUGGACUUGaaaCG- -5' |
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8170 | 3' | -54.8 | NC_001978.2 | + | 29156 | 0.77 | 0.16594 |
Target: 5'- gUCGGCgccuGCCGCUCGACCgGAACcguacguaUGCc -3' miRNA: 3'- -AGCCG----CGGCGAGCUGGaCUUGaa------ACG- -5' |
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8170 | 3' | -54.8 | NC_001978.2 | + | 8500 | 0.74 | 0.262918 |
Target: 5'- aCGGgucaGCCGCUCGAcucCCUGAACaagGCc -3' miRNA: 3'- aGCCg---CGGCGAGCU---GGACUUGaaaCG- -5' |
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8170 | 3' | -54.8 | NC_001978.2 | + | 25575 | 0.73 | 0.269863 |
Target: 5'- gUGGCGCCcagggGCgUGACCUGAGCg--GCa -3' miRNA: 3'- aGCCGCGG-----CGaGCUGGACUUGaaaCG- -5' |
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8170 | 3' | -54.8 | NC_001978.2 | + | 32471 | 0.72 | 0.339061 |
Target: 5'- aCGGUGCCGaCUCGACCgacugacGAcCUgggGCg -3' miRNA: 3'- aGCCGCGGC-GAGCUGGa------CUuGAaa-CG- -5' |
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8170 | 3' | -54.8 | NC_001978.2 | + | 4089 | 0.71 | 0.364823 |
Target: 5'- -gGGUGCCGCUgaACCUGGGCgaagucgGCg -3' miRNA: 3'- agCCGCGGCGAgcUGGACUUGaaa----CG- -5' |
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8170 | 3' | -54.8 | NC_001978.2 | + | 18381 | 0.71 | 0.364823 |
Target: 5'- gUCGGCGUCGCUaCGGCCgugaagccGGACUUcccggGUa -3' miRNA: 3'- -AGCCGCGGCGA-GCUGGa-------CUUGAAa----CG- -5' |
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8170 | 3' | -54.8 | NC_001978.2 | + | 33754 | 0.7 | 0.401222 |
Target: 5'- gUCGG-GUCGCUCGACCgUGAAg---GCg -3' miRNA: 3'- -AGCCgCGGCGAGCUGG-ACUUgaaaCG- -5' |
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8170 | 3' | -54.8 | NC_001978.2 | + | 23824 | 0.69 | 0.480508 |
Target: 5'- cCGGCGUCGC-CGgaaGCCUGGGCacacaccaUGCg -3' miRNA: 3'- aGCCGCGGCGaGC---UGGACUUGaa------ACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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