miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8170 3' -54.8 NC_001978.2 + 2291 0.67 0.62256
Target:  5'- gUGGCuuGCCGCauucgCGACCUGAAgg-UGUu -3'
miRNA:   3'- aGCCG--CGGCGa----GCUGGACUUgaaACG- -5'
8170 3' -54.8 NC_001978.2 + 2985 0.66 0.656268
Target:  5'- -gGGCGCCGUUCGGCUUc--Cg--GCg -3'
miRNA:   3'- agCCGCGGCGAGCUGGAcuuGaaaCG- -5'
8170 3' -54.8 NC_001978.2 + 4089 0.71 0.364823
Target:  5'- -gGGUGCCGCUgaACCUGGGCgaagucgGCg -3'
miRNA:   3'- agCCGCGGCGAgcUGGACUUGaaa----CG- -5'
8170 3' -54.8 NC_001978.2 + 7997 0.69 0.501514
Target:  5'- cCGGCGUUccggGCUCGACguacgUGAGCUugaUUGCg -3'
miRNA:   3'- aGCCGCGG----CGAGCUGg----ACUUGA---AACG- -5'
8170 3' -54.8 NC_001978.2 + 8500 0.74 0.262918
Target:  5'- aCGGgucaGCCGCUCGAcucCCUGAACaagGCc -3'
miRNA:   3'- aGCCg---CGGCGAGCU---GGACUUGaaaCG- -5'
8170 3' -54.8 NC_001978.2 + 8653 0.69 0.501514
Target:  5'- gUCGGCGg-GCUCGAUCUcaggGAACU-UGCg -3'
miRNA:   3'- -AGCCGCggCGAGCUGGA----CUUGAaACG- -5'
8170 3' -54.8 NC_001978.2 + 8961 0.67 0.600114
Target:  5'- gUCGGCGUCGCccauaaucgUGAUCUGAAUgg-GUc -3'
miRNA:   3'- -AGCCGCGGCGa--------GCUGGACUUGaaaCG- -5'
8170 3' -54.8 NC_001978.2 + 9276 0.72 0.314645
Target:  5'- gUCGGcCGUCGCUcCGGCCgGAACgagccccugUUGCc -3'
miRNA:   3'- -AGCC-GCGGCGA-GCUGGaCUUGa--------AACG- -5'
8170 3' -54.8 NC_001978.2 + 9665 0.76 0.175424
Target:  5'- cUCGGCGCCGUUCaGCCccaUGGACUUguacGCc -3'
miRNA:   3'- -AGCCGCGGCGAGcUGG---ACUUGAAa---CG- -5'
8170 3' -54.8 NC_001978.2 + 11466 1.13 0.000415
Target:  5'- gUCGGCGCCGCUCGACCUGAACUUUGCg -3'
miRNA:   3'- -AGCCGCGGCGAGCUGGACUUGAAACG- -5'
8170 3' -54.8 NC_001978.2 + 11573 0.66 0.645041
Target:  5'- aCGucGCGUaaaGCUCGACC-GAAUgUUGCa -3'
miRNA:   3'- aGC--CGCGg--CGAGCUGGaCUUGaAACG- -5'
8170 3' -54.8 NC_001978.2 + 11653 0.68 0.554535
Target:  5'- cCGGCGCCGgaCGACCcGGuaagccgcuucACUcaguacggcagcgUUGCg -3'
miRNA:   3'- aGCCGCGGCgaGCUGGaCU-----------UGA-------------AACG- -5'
8170 3' -54.8 NC_001978.2 + 11702 0.66 0.689765
Target:  5'- cCGGCGCCGgucccugcccUUCGAUCUGccACg--GCa -3'
miRNA:   3'- aGCCGCGGC----------GAGCUGGACu-UGaaaCG- -5'
8170 3' -54.8 NC_001978.2 + 16707 0.67 0.588929
Target:  5'- gUCGGCGCCGUUCcGCUgcc-CaUUGCg -3'
miRNA:   3'- -AGCCGCGGCGAGcUGGacuuGaAACG- -5'
8170 3' -54.8 NC_001978.2 + 18381 0.71 0.364823
Target:  5'- gUCGGCGUCGCUaCGGCCgugaagccGGACUUcccggGUa -3'
miRNA:   3'- -AGCCGCGGCGA-GCUGGa-------CUUGAAa----CG- -5'
8170 3' -54.8 NC_001978.2 + 21159 0.67 0.577782
Target:  5'- cUCGGCGUCGCucuucUCGGCCUucGGCUcaaGCu -3'
miRNA:   3'- -AGCCGCGGCG-----AGCUGGAc-UUGAaa-CG- -5'
8170 3' -54.8 NC_001978.2 + 21237 0.68 0.530486
Target:  5'- uUCGcGCuGCCGCcgacgcguucgaccUUGACCUGAGCgc-GCu -3'
miRNA:   3'- -AGC-CG-CGGCG--------------AGCUGGACUUGaaaCG- -5'
8170 3' -54.8 NC_001978.2 + 21616 0.68 0.566681
Target:  5'- aCaGCGCCGCacagcggaUGACCUGGGCUgaGUg -3'
miRNA:   3'- aGcCGCGGCGa-------GCUGGACUUGAaaCG- -5'
8170 3' -54.8 NC_001978.2 + 23221 0.67 0.588929
Target:  5'- gUGGCGUauCUCGACCggcGAACaguccgUUGCg -3'
miRNA:   3'- aGCCGCGgcGAGCUGGa--CUUGa-----AACG- -5'
8170 3' -54.8 NC_001978.2 + 23670 0.66 0.645041
Target:  5'- gUGGCGCUguGCUCGccaaucucgaACUUGAGCU-UGUg -3'
miRNA:   3'- aGCCGCGG--CGAGC----------UGGACUUGAaACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.