Results 21 - 27 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8171 | 3' | -64.5 | NC_001978.2 | + | 8832 | 0.68 | 0.17243 |
Target: 5'- aGCGGGGgcACUGaGCGCCGcACG-CCCGu -3' miRNA: 3'- cCGUCCC--UGGC-CGCGGCcUGCuGGGC- -5' |
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8171 | 3' | -64.5 | NC_001978.2 | + | 4617 | 0.68 | 0.176916 |
Target: 5'- gGGCAGcGACgGGCGgaCGacGACGACCCu -3' miRNA: 3'- -CCGUCcCUGgCCGCg-GC--CUGCUGGGc -5' |
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8171 | 3' | -64.5 | NC_001978.2 | + | 11447 | 0.68 | 0.181507 |
Target: 5'- uGGCAcGGGCacgcaagcgguCGGCGCCGcuCGACCUGa -3' miRNA: 3'- -CCGUcCCUG-----------GCCGCGGCcuGCUGGGC- -5' |
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8171 | 3' | -64.5 | NC_001978.2 | + | 40280 | 0.68 | 0.186202 |
Target: 5'- gGGCAGcGGgaagggucgGCCGGUcccCCGGuCGGCCCa -3' miRNA: 3'- -CCGUC-CC---------UGGCCGc--GGCCuGCUGGGc -5' |
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8171 | 3' | -64.5 | NC_001978.2 | + | 12038 | 0.67 | 0.206069 |
Target: 5'- uGGCAGGuGAUcgcuaCGGCGCgCGG-CGGCuuCCGg -3' miRNA: 3'- -CCGUCC-CUG-----GCCGCG-GCCuGCUG--GGC- -5' |
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8171 | 3' | -64.5 | NC_001978.2 | + | 18086 | 0.67 | 0.211314 |
Target: 5'- uGGCAGcgcaagcgcGGuuacuCCGGCGCCGacgcuGACGguugGCCCGg -3' miRNA: 3'- -CCGUC---------CCu----GGCCGCGGC-----CUGC----UGGGC- -5' |
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8171 | 3' | -64.5 | NC_001978.2 | + | 11644 | 1.1 | 0.000098 |
Target: 5'- gGGCAGGGACCGGCGCCGGACGACCCGg -3' miRNA: 3'- -CCGUCCCUGGCCGCGGCCUGCUGGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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