Results 21 - 27 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8171 | 3' | -64.5 | NC_001978.2 | + | 5594 | 0.7 | 0.136428 |
Target: 5'- uGGCc-GGACCGGCGUCGGA-GACaaGg -3' miRNA: 3'- -CCGucCCUGGCCGCGGCCUgCUGggC- -5' |
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8171 | 3' | -64.5 | NC_001978.2 | + | 987 | 0.7 | 0.132884 |
Target: 5'- cGGCGGGaGuCUGGCGgggGcGACGACCCGg -3' miRNA: 3'- -CCGUCC-CuGGCCGCgg-C-CUGCUGGGC- -5' |
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8171 | 3' | -64.5 | NC_001978.2 | + | 1280 | 0.71 | 0.122755 |
Target: 5'- cGUGGcGGACUGG-GCCGGAauCGACCCc -3' miRNA: 3'- cCGUC-CCUGGCCgCGGCCU--GCUGGGc -5' |
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8171 | 3' | -64.5 | NC_001978.2 | + | 28009 | 0.72 | 0.100222 |
Target: 5'- cGGCAuuGGGACCGGCcucaaGCCGcucagugcguucuacGuCGACCCGu -3' miRNA: 3'- -CCGU--CCCUGGCCG-----CGGC---------------CuGCUGGGC- -5' |
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8171 | 3' | -64.5 | NC_001978.2 | + | 20883 | 0.72 | 0.08902 |
Target: 5'- gGGCAGGGaAUCGaGCuuccccgcuacgGCCGGACGgagcuuGCCCGg -3' miRNA: 3'- -CCGUCCC-UGGC-CG------------CGGCCUGC------UGGGC- -5' |
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8171 | 3' | -64.5 | NC_001978.2 | + | 10871 | 0.77 | 0.036969 |
Target: 5'- uGGguG-GACCGGCGuCCgGGugGACCCGu -3' miRNA: 3'- -CCguCcCUGGCCGC-GG-CCugCUGGGC- -5' |
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8171 | 3' | -64.5 | NC_001978.2 | + | 11644 | 1.1 | 0.000098 |
Target: 5'- gGGCAGGGACCGGCGCCGGACGACCCGg -3' miRNA: 3'- -CCGUCCCUGGCCGCGGCCUGCUGGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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