miRNA display CGI


Results 21 - 27 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8171 3' -64.5 NC_001978.2 + 5594 0.7 0.136428
Target:  5'- uGGCc-GGACCGGCGUCGGA-GACaaGg -3'
miRNA:   3'- -CCGucCCUGGCCGCGGCCUgCUGggC- -5'
8171 3' -64.5 NC_001978.2 + 987 0.7 0.132884
Target:  5'- cGGCGGGaGuCUGGCGgggGcGACGACCCGg -3'
miRNA:   3'- -CCGUCC-CuGGCCGCgg-C-CUGCUGGGC- -5'
8171 3' -64.5 NC_001978.2 + 1280 0.71 0.122755
Target:  5'- cGUGGcGGACUGG-GCCGGAauCGACCCc -3'
miRNA:   3'- cCGUC-CCUGGCCgCGGCCU--GCUGGGc -5'
8171 3' -64.5 NC_001978.2 + 28009 0.72 0.100222
Target:  5'- cGGCAuuGGGACCGGCcucaaGCCGcucagugcguucuacGuCGACCCGu -3'
miRNA:   3'- -CCGU--CCCUGGCCG-----CGGC---------------CuGCUGGGC- -5'
8171 3' -64.5 NC_001978.2 + 20883 0.72 0.08902
Target:  5'- gGGCAGGGaAUCGaGCuuccccgcuacgGCCGGACGgagcuuGCCCGg -3'
miRNA:   3'- -CCGUCCC-UGGC-CG------------CGGCCUGC------UGGGC- -5'
8171 3' -64.5 NC_001978.2 + 10871 0.77 0.036969
Target:  5'- uGGguG-GACCGGCGuCCgGGugGACCCGu -3'
miRNA:   3'- -CCguCcCUGGCCGC-GG-CCugCUGGGC- -5'
8171 3' -64.5 NC_001978.2 + 11644 1.1 0.000098
Target:  5'- gGGCAGGGACCGGCGCCGGACGACCCGg -3'
miRNA:   3'- -CCGUCCCUGGCCGCGGCCUGCUGGGC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.