miRNA display CGI


Results 1 - 20 of 40 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8174 3' -54.6 NC_001978.2 + 11507 0.66 0.724443
Target:  5'- aCAugUCgGUCGAgCUUuacgCGACGUCGc -3'
miRNA:   3'- -GUugAGgCAGCUgGAAcg--GCUGCAGC- -5'
8174 3' -54.6 NC_001978.2 + 9973 0.66 0.713643
Target:  5'- gGGCaUCgGUCGACUaUGgCGACgGUCGg -3'
miRNA:   3'- gUUG-AGgCAGCUGGaACgGCUG-CAGC- -5'
8174 3' -54.6 NC_001978.2 + 33140 0.66 0.713643
Target:  5'- aCAACcaUGUCGACCg-GCgCGGCGUUGg -3'
miRNA:   3'- -GUUGagGCAGCUGGaaCG-GCUGCAGC- -5'
8174 3' -54.6 NC_001978.2 + 13745 0.66 0.713643
Target:  5'- aAGCUUCGU--GCCgUUGCCGuuGUCGg -3'
miRNA:   3'- gUUGAGGCAgcUGG-AACGGCugCAGC- -5'
8174 3' -54.6 NC_001978.2 + 17693 0.66 0.702761
Target:  5'- aCGGCUCCGgacggcucagCGGgCUUGUcaggCGugGUCGa -3'
miRNA:   3'- -GUUGAGGCa---------GCUgGAACG----GCugCAGC- -5'
8174 3' -54.6 NC_001978.2 + 11168 0.66 0.702761
Target:  5'- cCGACUCCGccauuUCGAU--UGUCGGgGUCGa -3'
miRNA:   3'- -GUUGAGGC-----AGCUGgaACGGCUgCAGC- -5'
8174 3' -54.6 NC_001978.2 + 16315 0.66 0.702761
Target:  5'- aAGCgugaCCGUCgGACCcggcuucgugUUGaCCGACGUCa -3'
miRNA:   3'- gUUGa---GGCAG-CUGG----------AAC-GGCUGCAGc -5'
8174 3' -54.6 NC_001978.2 + 34605 0.66 0.696198
Target:  5'- aAGCUCCG-CGACCgacugaacgcccagcUUGCCGGguUCGa -3'
miRNA:   3'- gUUGAGGCaGCUGG---------------AACGGCUgcAGC- -5'
8174 3' -54.6 NC_001978.2 + 30426 0.66 0.691809
Target:  5'- gCGGCUUCGgcgCGuuCCUUGCUGA-GUCGc -3'
miRNA:   3'- -GUUGAGGCa--GCu-GGAACGGCUgCAGC- -5'
8174 3' -54.6 NC_001978.2 + 12245 0.66 0.680797
Target:  5'- --uCUCCGcUCGACCaUGCCcACGUg- -3'
miRNA:   3'- guuGAGGC-AGCUGGaACGGcUGCAgc -5'
8174 3' -54.6 NC_001978.2 + 2623 0.66 0.680797
Target:  5'- uGGCUCaGUCGACCgucacgGCaCG-CGUCGu -3'
miRNA:   3'- gUUGAGgCAGCUGGaa----CG-GCuGCAGC- -5'
8174 3' -54.6 NC_001978.2 + 22728 0.66 0.680797
Target:  5'- uGGCaUUCGUCGGCgUcguguucgucgcUGCCGuCGUCGg -3'
miRNA:   3'- gUUG-AGGCAGCUGgA------------ACGGCuGCAGC- -5'
8174 3' -54.6 NC_001978.2 + 5316 0.67 0.669739
Target:  5'- uGGCg-CGUCGACCUU-CaCGACGUCc -3'
miRNA:   3'- gUUGagGCAGCUGGAAcG-GCUGCAGc -5'
8174 3' -54.6 NC_001978.2 + 36843 0.67 0.669739
Target:  5'- aGGCUCCGgcucaGGCU---CCGGCGUCGg -3'
miRNA:   3'- gUUGAGGCag---CUGGaacGGCUGCAGC- -5'
8174 3' -54.6 NC_001978.2 + 32338 0.67 0.668631
Target:  5'- gAACgUCCGUCcgcugggcgucguGACCcgGUCGACGUUGa -3'
miRNA:   3'- gUUG-AGGCAG-------------CUGGaaCGGCUGCAGC- -5'
8174 3' -54.6 NC_001978.2 + 5933 0.67 0.658644
Target:  5'- -cGCUCCGugUCGACCguucgGuuGACG-CGa -3'
miRNA:   3'- guUGAGGC--AGCUGGaa---CggCUGCaGC- -5'
8174 3' -54.6 NC_001978.2 + 29964 0.67 0.647523
Target:  5'- ----gCCGaCGACCUUGCCGACc--- -3'
miRNA:   3'- guugaGGCaGCUGGAACGGCUGcagc -5'
8174 3' -54.6 NC_001978.2 + 35747 0.67 0.62525
Target:  5'- cCGGCUCCGUacggGGCUUcgagUGCCGACcgGUCu -3'
miRNA:   3'- -GUUGAGGCAg---CUGGA----ACGGCUG--CAGc -5'
8174 3' -54.6 NC_001978.2 + 19574 0.67 0.618569
Target:  5'- uCAGCUCCGUgucgaacgucCGGCCgugaagggucacgGCaCGGCGUCa -3'
miRNA:   3'- -GUUGAGGCA----------GCUGGaa-----------CG-GCUGCAGc -5'
8174 3' -54.6 NC_001978.2 + 20397 0.67 0.614117
Target:  5'- gAAgUCgaGUCGcGCCggucgGCCGACGUCGc -3'
miRNA:   3'- gUUgAGg-CAGC-UGGaa---CGGCUGCAGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.