Results 1 - 20 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
8174 | 3' | -54.6 | NC_001978.2 | + | 11507 | 0.66 | 0.724443 |
Target: 5'- aCAugUCgGUCGAgCUUuacgCGACGUCGc -3' miRNA: 3'- -GUugAGgCAGCUgGAAcg--GCUGCAGC- -5' |
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8174 | 3' | -54.6 | NC_001978.2 | + | 13745 | 0.66 | 0.713643 |
Target: 5'- aAGCUUCGU--GCCgUUGCCGuuGUCGg -3' miRNA: 3'- gUUGAGGCAgcUGG-AACGGCugCAGC- -5' |
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8174 | 3' | -54.6 | NC_001978.2 | + | 9973 | 0.66 | 0.713643 |
Target: 5'- gGGCaUCgGUCGACUaUGgCGACgGUCGg -3' miRNA: 3'- gUUG-AGgCAGCUGGaACgGCUG-CAGC- -5' |
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8174 | 3' | -54.6 | NC_001978.2 | + | 33140 | 0.66 | 0.713643 |
Target: 5'- aCAACcaUGUCGACCg-GCgCGGCGUUGg -3' miRNA: 3'- -GUUGagGCAGCUGGaaCG-GCUGCAGC- -5' |
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8174 | 3' | -54.6 | NC_001978.2 | + | 17693 | 0.66 | 0.702761 |
Target: 5'- aCGGCUCCGgacggcucagCGGgCUUGUcaggCGugGUCGa -3' miRNA: 3'- -GUUGAGGCa---------GCUgGAACG----GCugCAGC- -5' |
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8174 | 3' | -54.6 | NC_001978.2 | + | 16315 | 0.66 | 0.702761 |
Target: 5'- aAGCgugaCCGUCgGACCcggcuucgugUUGaCCGACGUCa -3' miRNA: 3'- gUUGa---GGCAG-CUGG----------AAC-GGCUGCAGc -5' |
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8174 | 3' | -54.6 | NC_001978.2 | + | 11168 | 0.66 | 0.702761 |
Target: 5'- cCGACUCCGccauuUCGAU--UGUCGGgGUCGa -3' miRNA: 3'- -GUUGAGGC-----AGCUGgaACGGCUgCAGC- -5' |
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8174 | 3' | -54.6 | NC_001978.2 | + | 34605 | 0.66 | 0.696198 |
Target: 5'- aAGCUCCG-CGACCgacugaacgcccagcUUGCCGGguUCGa -3' miRNA: 3'- gUUGAGGCaGCUGG---------------AACGGCUgcAGC- -5' |
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8174 | 3' | -54.6 | NC_001978.2 | + | 30426 | 0.66 | 0.691809 |
Target: 5'- gCGGCUUCGgcgCGuuCCUUGCUGA-GUCGc -3' miRNA: 3'- -GUUGAGGCa--GCu-GGAACGGCUgCAGC- -5' |
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8174 | 3' | -54.6 | NC_001978.2 | + | 22728 | 0.66 | 0.680797 |
Target: 5'- uGGCaUUCGUCGGCgUcguguucgucgcUGCCGuCGUCGg -3' miRNA: 3'- gUUG-AGGCAGCUGgA------------ACGGCuGCAGC- -5' |
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8174 | 3' | -54.6 | NC_001978.2 | + | 12245 | 0.66 | 0.680797 |
Target: 5'- --uCUCCGcUCGACCaUGCCcACGUg- -3' miRNA: 3'- guuGAGGC-AGCUGGaACGGcUGCAgc -5' |
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8174 | 3' | -54.6 | NC_001978.2 | + | 2623 | 0.66 | 0.680797 |
Target: 5'- uGGCUCaGUCGACCgucacgGCaCG-CGUCGu -3' miRNA: 3'- gUUGAGgCAGCUGGaa----CG-GCuGCAGC- -5' |
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8174 | 3' | -54.6 | NC_001978.2 | + | 5316 | 0.67 | 0.669739 |
Target: 5'- uGGCg-CGUCGACCUU-CaCGACGUCc -3' miRNA: 3'- gUUGagGCAGCUGGAAcG-GCUGCAGc -5' |
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8174 | 3' | -54.6 | NC_001978.2 | + | 36843 | 0.67 | 0.669739 |
Target: 5'- aGGCUCCGgcucaGGCU---CCGGCGUCGg -3' miRNA: 3'- gUUGAGGCag---CUGGaacGGCUGCAGC- -5' |
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8174 | 3' | -54.6 | NC_001978.2 | + | 32338 | 0.67 | 0.668631 |
Target: 5'- gAACgUCCGUCcgcugggcgucguGACCcgGUCGACGUUGa -3' miRNA: 3'- gUUG-AGGCAG-------------CUGGaaCGGCUGCAGC- -5' |
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8174 | 3' | -54.6 | NC_001978.2 | + | 5933 | 0.67 | 0.658644 |
Target: 5'- -cGCUCCGugUCGACCguucgGuuGACG-CGa -3' miRNA: 3'- guUGAGGC--AGCUGGaa---CggCUGCaGC- -5' |
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8174 | 3' | -54.6 | NC_001978.2 | + | 29964 | 0.67 | 0.647523 |
Target: 5'- ----gCCGaCGACCUUGCCGACc--- -3' miRNA: 3'- guugaGGCaGCUGGAACGGCUGcagc -5' |
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8174 | 3' | -54.6 | NC_001978.2 | + | 35747 | 0.67 | 0.62525 |
Target: 5'- cCGGCUCCGUacggGGCUUcgagUGCCGACcgGUCu -3' miRNA: 3'- -GUUGAGGCAg---CUGGA----ACGGCUG--CAGc -5' |
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8174 | 3' | -54.6 | NC_001978.2 | + | 19574 | 0.67 | 0.618569 |
Target: 5'- uCAGCUCCGUgucgaacgucCGGCCgugaagggucacgGCaCGGCGUCa -3' miRNA: 3'- -GUUGAGGCA----------GCUGGaa-----------CG-GCUGCAGc -5' |
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8174 | 3' | -54.6 | NC_001978.2 | + | 20397 | 0.67 | 0.614117 |
Target: 5'- gAAgUCgaGUCGcGCCggucgGCCGACGUCGc -3' miRNA: 3'- gUUgAGg-CAGC-UGGaa---CGGCUGCAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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