miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8174 3' -54.6 NC_001978.2 + 15467 1.08 0.001112
Target:  5'- aCAACUCCGUCGACCUUGCCGACGUCGc -3'
miRNA:   3'- -GUUGAGGCAGCUGGAACGGCUGCAGC- -5'
8174 3' -54.6 NC_001978.2 + 25257 0.79 0.139437
Target:  5'- uCAGCUCCGUCGGCCUgaagugGuCCGacuuguucaacGCGUCGg -3'
miRNA:   3'- -GUUGAGGCAGCUGGAa-----C-GGC-----------UGCAGC- -5'
8174 3' -54.6 NC_001978.2 + 9882 0.78 0.147468
Target:  5'- cCGACUucgccgcgCCGUCGACCUUGCCcaGCGUCu -3'
miRNA:   3'- -GUUGA--------GGCAGCUGGAACGGc-UGCAGc -5'
8174 3' -54.6 NC_001978.2 + 18362 0.75 0.23429
Target:  5'- ---gUCCGUCGucgucgcCCUUGUCGGCGUCGc -3'
miRNA:   3'- guugAGGCAGCu------GGAACGGCUGCAGC- -5'
8174 3' -54.6 NC_001978.2 + 6803 0.75 0.253483
Target:  5'- -cGCUCagCGUCGACCggauUGcCCGGCGUCGu -3'
miRNA:   3'- guUGAG--GCAGCUGGa---AC-GGCUGCAGC- -5'
8174 3' -54.6 NC_001978.2 + 12342 0.72 0.34323
Target:  5'- gAGC-CCGUUGaaGCCguccgcUGCCGACGUCGu -3'
miRNA:   3'- gUUGaGGCAGC--UGGa-----ACGGCUGCAGC- -5'
8174 3' -54.6 NC_001978.2 + 5128 0.72 0.360244
Target:  5'- aCAGCgUCCGUCG-CCUUaaUGGCGUCGa -3'
miRNA:   3'- -GUUG-AGGCAGCuGGAAcgGCUGCAGC- -5'
8174 3' -54.6 NC_001978.2 + 18652 0.71 0.395999
Target:  5'- -cGCUCCGaaUCGACCcgcucauuCCGACGUCGu -3'
miRNA:   3'- guUGAGGC--AGCUGGaac-----GGCUGCAGC- -5'
8174 3' -54.6 NC_001978.2 + 33216 0.7 0.44378
Target:  5'- cCAACUCCGUUcagGACa-UGCCGACuUCGc -3'
miRNA:   3'- -GUUGAGGCAG---CUGgaACGGCUGcAGC- -5'
8174 3' -54.6 NC_001978.2 + 29047 0.7 0.44378
Target:  5'- gCGACUCCGcccccguaGACCUUGCCGAaucCGg -3'
miRNA:   3'- -GUUGAGGCag------CUGGAACGGCUgcaGC- -5'
8174 3' -54.6 NC_001978.2 + 25407 0.7 0.463781
Target:  5'- cCGACUacgCCGcCGACCgguucggGCuCGACGUCGc -3'
miRNA:   3'- -GUUGA---GGCaGCUGGaa-----CG-GCUGCAGC- -5'
8174 3' -54.6 NC_001978.2 + 32117 0.7 0.484243
Target:  5'- cCGGCUCCGaCGACUUcacgaaGCCGACGaCGc -3'
miRNA:   3'- -GUUGAGGCaGCUGGAa-----CGGCUGCaGC- -5'
8174 3' -54.6 NC_001978.2 + 35930 0.69 0.515715
Target:  5'- uGACgUCUGgaaUCGAUa-UGCCGACGUCGg -3'
miRNA:   3'- gUUG-AGGC---AGCUGgaACGGCUGCAGC- -5'
8174 3' -54.6 NC_001978.2 + 16061 0.69 0.534991
Target:  5'- gGGCUCCGUCaacucugugaacgguGACCUagggccggaUaucacccuugccgcuGCCGACGUCGg -3'
miRNA:   3'- gUUGAGGCAG---------------CUGGA---------A---------------CGGCUGCAGC- -5'
8174 3' -54.6 NC_001978.2 + 32885 0.68 0.558881
Target:  5'- uCAGCgcuaCGUCGACCacGCCGACacugagccgGUCGu -3'
miRNA:   3'- -GUUGag--GCAGCUGGaaCGGCUG---------CAGC- -5'
8174 3' -54.6 NC_001978.2 + 35834 0.68 0.580854
Target:  5'- aCGAC-CUGggcgcCGACCUucccuUGcCCGACGUCGg -3'
miRNA:   3'- -GUUGaGGCa----GCUGGA-----AC-GGCUGCAGC- -5'
8174 3' -54.6 NC_001978.2 + 28398 0.68 0.580854
Target:  5'- uCGACUCCGUCaACUccggcgcccaggUUGCCGaaGCGUUGc -3'
miRNA:   3'- -GUUGAGGCAGcUGG------------AACGGC--UGCAGC- -5'
8174 3' -54.6 NC_001978.2 + 16197 0.68 0.58859
Target:  5'- gCAACUCCcuuGUCGGCaacgggaaucgccCCGACGUCGg -3'
miRNA:   3'- -GUUGAGG---CAGCUGgaac---------GGCUGCAGC- -5'
8174 3' -54.6 NC_001978.2 + 30712 0.68 0.603001
Target:  5'- uCGACgcccuugCCGUCcuucacGCCgccgUGUCGACGUCGa -3'
miRNA:   3'- -GUUGa------GGCAGc-----UGGa---ACGGCUGCAGC- -5'
8174 3' -54.6 NC_001978.2 + 28716 0.68 0.603001
Target:  5'- gCGACUUCG-CGGCUcaaacgcUGCCGuCGUCGg -3'
miRNA:   3'- -GUUGAGGCaGCUGGa------ACGGCuGCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.