miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8174 3' -54.6 NC_001978.2 + 2623 0.66 0.680797
Target:  5'- uGGCUCaGUCGACCgucacgGCaCG-CGUCGu -3'
miRNA:   3'- gUUGAGgCAGCUGGaa----CG-GCuGCAGC- -5'
8174 3' -54.6 NC_001978.2 + 5128 0.72 0.360244
Target:  5'- aCAGCgUCCGUCG-CCUUaaUGGCGUCGa -3'
miRNA:   3'- -GUUG-AGGCAGCuGGAAcgGCUGCAGC- -5'
8174 3' -54.6 NC_001978.2 + 5316 0.67 0.669739
Target:  5'- uGGCg-CGUCGACCUU-CaCGACGUCc -3'
miRNA:   3'- gUUGagGCAGCUGGAAcG-GCUGCAGc -5'
8174 3' -54.6 NC_001978.2 + 5933 0.67 0.658644
Target:  5'- -cGCUCCGugUCGACCguucgGuuGACG-CGa -3'
miRNA:   3'- guUGAGGC--AGCUGGaa---CggCUGCaGC- -5'
8174 3' -54.6 NC_001978.2 + 6803 0.75 0.253483
Target:  5'- -cGCUCagCGUCGACCggauUGcCCGGCGUCGu -3'
miRNA:   3'- guUGAG--GCAGCUGGa---AC-GGCUGCAGC- -5'
8174 3' -54.6 NC_001978.2 + 9882 0.78 0.147468
Target:  5'- cCGACUucgccgcgCCGUCGACCUUGCCcaGCGUCu -3'
miRNA:   3'- -GUUGA--------GGCAGCUGGAACGGc-UGCAGc -5'
8174 3' -54.6 NC_001978.2 + 9973 0.66 0.713643
Target:  5'- gGGCaUCgGUCGACUaUGgCGACgGUCGg -3'
miRNA:   3'- gUUG-AGgCAGCUGGaACgGCUG-CAGC- -5'
8174 3' -54.6 NC_001978.2 + 11168 0.66 0.702761
Target:  5'- cCGACUCCGccauuUCGAU--UGUCGGgGUCGa -3'
miRNA:   3'- -GUUGAGGC-----AGCUGgaACGGCUgCAGC- -5'
8174 3' -54.6 NC_001978.2 + 11507 0.66 0.724443
Target:  5'- aCAugUCgGUCGAgCUUuacgCGACGUCGc -3'
miRNA:   3'- -GUugAGgCAGCUgGAAcg--GCUGCAGC- -5'
8174 3' -54.6 NC_001978.2 + 12245 0.66 0.680797
Target:  5'- --uCUCCGcUCGACCaUGCCcACGUg- -3'
miRNA:   3'- guuGAGGC-AGCUGGaACGGcUGCAgc -5'
8174 3' -54.6 NC_001978.2 + 12342 0.72 0.34323
Target:  5'- gAGC-CCGUUGaaGCCguccgcUGCCGACGUCGu -3'
miRNA:   3'- gUUGaGGCAGC--UGGa-----ACGGCUGCAGC- -5'
8174 3' -54.6 NC_001978.2 + 13745 0.66 0.713643
Target:  5'- aAGCUUCGU--GCCgUUGCCGuuGUCGg -3'
miRNA:   3'- gUUGAGGCAgcUGG-AACGGCugCAGC- -5'
8174 3' -54.6 NC_001978.2 + 15467 1.08 0.001112
Target:  5'- aCAACUCCGUCGACCUUGCCGACGUCGc -3'
miRNA:   3'- -GUUGAGGCAGCUGGAACGGCUGCAGC- -5'
8174 3' -54.6 NC_001978.2 + 16061 0.69 0.534991
Target:  5'- gGGCUCCGUCaacucugugaacgguGACCUagggccggaUaucacccuugccgcuGCCGACGUCGg -3'
miRNA:   3'- gUUGAGGCAG---------------CUGGA---------A---------------CGGCUGCAGC- -5'
8174 3' -54.6 NC_001978.2 + 16197 0.68 0.58859
Target:  5'- gCAACUCCcuuGUCGGCaacgggaaucgccCCGACGUCGg -3'
miRNA:   3'- -GUUGAGG---CAGCUGgaac---------GGCUGCAGC- -5'
8174 3' -54.6 NC_001978.2 + 16315 0.66 0.702761
Target:  5'- aAGCgugaCCGUCgGACCcggcuucgugUUGaCCGACGUCa -3'
miRNA:   3'- gUUGa---GGCAG-CUGG----------AAC-GGCUGCAGc -5'
8174 3' -54.6 NC_001978.2 + 17693 0.66 0.702761
Target:  5'- aCGGCUCCGgacggcucagCGGgCUUGUcaggCGugGUCGa -3'
miRNA:   3'- -GUUGAGGCa---------GCUgGAACG----GCugCAGC- -5'
8174 3' -54.6 NC_001978.2 + 18362 0.75 0.23429
Target:  5'- ---gUCCGUCGucgucgcCCUUGUCGGCGUCGc -3'
miRNA:   3'- guugAGGCAGCu------GGAACGGCUGCAGC- -5'
8174 3' -54.6 NC_001978.2 + 18652 0.71 0.395999
Target:  5'- -cGCUCCGaaUCGACCcgcucauuCCGACGUCGu -3'
miRNA:   3'- guUGAGGC--AGCUGGaac-----GGCUGCAGC- -5'
8174 3' -54.6 NC_001978.2 + 19574 0.67 0.618569
Target:  5'- uCAGCUCCGUgucgaacgucCGGCCgugaagggucacgGCaCGGCGUCa -3'
miRNA:   3'- -GUUGAGGCA----------GCUGGaa-----------CG-GCUGCAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.