Results 1 - 20 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8174 | 3' | -54.6 | NC_001978.2 | + | 36843 | 0.67 | 0.669739 |
Target: 5'- aGGCUCCGgcucaGGCU---CCGGCGUCGg -3' miRNA: 3'- gUUGAGGCag---CUGGaacGGCUGCAGC- -5' |
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8174 | 3' | -54.6 | NC_001978.2 | + | 35930 | 0.69 | 0.515715 |
Target: 5'- uGACgUCUGgaaUCGAUa-UGCCGACGUCGg -3' miRNA: 3'- gUUG-AGGC---AGCUGgaACGGCUGCAGC- -5' |
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8174 | 3' | -54.6 | NC_001978.2 | + | 35834 | 0.68 | 0.580854 |
Target: 5'- aCGAC-CUGggcgcCGACCUucccuUGcCCGACGUCGg -3' miRNA: 3'- -GUUGaGGCa----GCUGGA-----AC-GGCUGCAGC- -5' |
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8174 | 3' | -54.6 | NC_001978.2 | + | 35747 | 0.67 | 0.62525 |
Target: 5'- cCGGCUCCGUacggGGCUUcgagUGCCGACcgGUCu -3' miRNA: 3'- -GUUGAGGCAg---CUGGA----ACGGCUG--CAGc -5' |
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8174 | 3' | -54.6 | NC_001978.2 | + | 34605 | 0.66 | 0.696198 |
Target: 5'- aAGCUCCG-CGACCgacugaacgcccagcUUGCCGGguUCGa -3' miRNA: 3'- gUUGAGGCaGCUGG---------------AACGGCUgcAGC- -5' |
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8174 | 3' | -54.6 | NC_001978.2 | + | 33216 | 0.7 | 0.44378 |
Target: 5'- cCAACUCCGUUcagGACa-UGCCGACuUCGc -3' miRNA: 3'- -GUUGAGGCAG---CUGgaACGGCUGcAGC- -5' |
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8174 | 3' | -54.6 | NC_001978.2 | + | 33140 | 0.66 | 0.713643 |
Target: 5'- aCAACcaUGUCGACCg-GCgCGGCGUUGg -3' miRNA: 3'- -GUUGagGCAGCUGGaaCG-GCUGCAGC- -5' |
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8174 | 3' | -54.6 | NC_001978.2 | + | 32885 | 0.68 | 0.558881 |
Target: 5'- uCAGCgcuaCGUCGACCacGCCGACacugagccgGUCGu -3' miRNA: 3'- -GUUGag--GCAGCUGGaaCGGCUG---------CAGC- -5' |
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8174 | 3' | -54.6 | NC_001978.2 | + | 32338 | 0.67 | 0.668631 |
Target: 5'- gAACgUCCGUCcgcugggcgucguGACCcgGUCGACGUUGa -3' miRNA: 3'- gUUG-AGGCAG-------------CUGGaaCGGCUGCAGC- -5' |
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8174 | 3' | -54.6 | NC_001978.2 | + | 32117 | 0.7 | 0.484243 |
Target: 5'- cCGGCUCCGaCGACUUcacgaaGCCGACGaCGc -3' miRNA: 3'- -GUUGAGGCaGCUGGAa-----CGGCUGCaGC- -5' |
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8174 | 3' | -54.6 | NC_001978.2 | + | 30712 | 0.68 | 0.603001 |
Target: 5'- uCGACgcccuugCCGUCcuucacGCCgccgUGUCGACGUCGa -3' miRNA: 3'- -GUUGa------GGCAGc-----UGGa---ACGGCUGCAGC- -5' |
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8174 | 3' | -54.6 | NC_001978.2 | + | 30426 | 0.66 | 0.691809 |
Target: 5'- gCGGCUUCGgcgCGuuCCUUGCUGA-GUCGc -3' miRNA: 3'- -GUUGAGGCa--GCu-GGAACGGCUgCAGC- -5' |
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8174 | 3' | -54.6 | NC_001978.2 | + | 29964 | 0.67 | 0.647523 |
Target: 5'- ----gCCGaCGACCUUGCCGACc--- -3' miRNA: 3'- guugaGGCaGCUGGAACGGCUGcagc -5' |
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8174 | 3' | -54.6 | NC_001978.2 | + | 29047 | 0.7 | 0.44378 |
Target: 5'- gCGACUCCGcccccguaGACCUUGCCGAaucCGg -3' miRNA: 3'- -GUUGAGGCag------CUGGAACGGCUgcaGC- -5' |
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8174 | 3' | -54.6 | NC_001978.2 | + | 28716 | 0.68 | 0.603001 |
Target: 5'- gCGACUUCG-CGGCUcaaacgcUGCCGuCGUCGg -3' miRNA: 3'- -GUUGAGGCaGCUGGa------ACGGCuGCAGC- -5' |
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8174 | 3' | -54.6 | NC_001978.2 | + | 28398 | 0.68 | 0.580854 |
Target: 5'- uCGACUCCGUCaACUccggcgcccaggUUGCCGaaGCGUUGc -3' miRNA: 3'- -GUUGAGGCAGcUGG------------AACGGC--UGCAGC- -5' |
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8174 | 3' | -54.6 | NC_001978.2 | + | 25407 | 0.7 | 0.463781 |
Target: 5'- cCGACUacgCCGcCGACCgguucggGCuCGACGUCGc -3' miRNA: 3'- -GUUGA---GGCaGCUGGaa-----CG-GCUGCAGC- -5' |
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8174 | 3' | -54.6 | NC_001978.2 | + | 25257 | 0.79 | 0.139437 |
Target: 5'- uCAGCUCCGUCGGCCUgaagugGuCCGacuuguucaacGCGUCGg -3' miRNA: 3'- -GUUGAGGCAGCUGGAa-----C-GGC-----------UGCAGC- -5' |
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8174 | 3' | -54.6 | NC_001978.2 | + | 22728 | 0.66 | 0.680797 |
Target: 5'- uGGCaUUCGUCGGCgUcguguucgucgcUGCCGuCGUCGg -3' miRNA: 3'- gUUG-AGGCAGCUGgA------------ACGGCuGCAGC- -5' |
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8174 | 3' | -54.6 | NC_001978.2 | + | 20397 | 0.67 | 0.614117 |
Target: 5'- gAAgUCgaGUCGcGCCggucgGCCGACGUCGc -3' miRNA: 3'- gUUgAGg-CAGC-UGGaa---CGGCUGCAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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