miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8174 5' -55 NC_001978.2 + 40279 0.68 0.61156
Target:  5'- uCCCGggugucucGCUACGCCG-C-UACGUcuuccgUGCCGu -3'
miRNA:   3'- -GGGC--------UGAUGCGGCuGcAUGCA------ACGGC- -5'
8174 5' -55 NC_001978.2 + 38641 0.71 0.414546
Target:  5'- uCCCGA--ACGCCGACGUGCccgGCg- -3'
miRNA:   3'- -GGGCUgaUGCGGCUGCAUGcaaCGgc -5'
8174 5' -55 NC_001978.2 + 37949 0.65 0.731383
Target:  5'- aCCCG-CUcACGCgCGACGUuguacgggACGgcGCCc -3'
miRNA:   3'- -GGGCuGA-UGCG-GCUGCA--------UGCaaCGGc -5'
8174 5' -55 NC_001978.2 + 37760 0.66 0.720764
Target:  5'- aCCCagggGCGCaCGACGggcGgGUUGCCGu -3'
miRNA:   3'- -GGGcugaUGCG-GCUGCa--UgCAACGGC- -5'
8174 5' -55 NC_001978.2 + 37436 0.66 0.699272
Target:  5'- cUCCGcCUACGCCGACGaagacacgACGacGCUc -3'
miRNA:   3'- -GGGCuGAUGCGGCUGCa-------UGCaaCGGc -5'
8174 5' -55 NC_001978.2 + 36056 0.7 0.453096
Target:  5'- gCCCuACU-CGCCGACGUGCuacacggGCCa -3'
miRNA:   3'- -GGGcUGAuGCGGCUGCAUGcaa----CGGc -5'
8174 5' -55 NC_001978.2 + 35992 0.68 0.578687
Target:  5'- cCCCggaGACUGcCGCCGACccggGCGUUGUg- -3'
miRNA:   3'- -GGG---CUGAU-GCGGCUGca--UGCAACGgc -5'
8174 5' -55 NC_001978.2 + 34307 0.72 0.36067
Target:  5'- gCCGACgGCGCaUGACGUaucGCGUUGCg- -3'
miRNA:   3'- gGGCUGaUGCG-GCUGCA---UGCAACGgc -5'
8174 5' -55 NC_001978.2 + 34201 0.67 0.655592
Target:  5'- cUCCGACUAUG-CGAacUGUGUUGCCGa -3'
miRNA:   3'- -GGGCUGAUGCgGCUgcAUGCAACGGC- -5'
8174 5' -55 NC_001978.2 + 33877 0.66 0.677518
Target:  5'- gCgCGugUACGCCGACGacgacccuUACGgcgacgUGuuGg -3'
miRNA:   3'- -GgGCugAUGCGGCUGC--------AUGCa-----ACggC- -5'
8174 5' -55 NC_001978.2 + 33835 0.71 0.423995
Target:  5'- gCUCGACUgucGgGCCGACG-GCGUuacccgggUGCCGa -3'
miRNA:   3'- -GGGCUGA---UgCGGCUGCaUGCA--------ACGGC- -5'
8174 5' -55 NC_001978.2 + 33631 0.66 0.720764
Target:  5'- aCCCGACggucacgGCGCCGACaaggGCGacacCCGc -3'
miRNA:   3'- -GGGCUGa------UGCGGCUGca--UGCaac-GGC- -5'
8174 5' -55 NC_001978.2 + 33215 0.68 0.589612
Target:  5'- uCCCGAauCUcaGCGUCGGCGgcaACG-UGCCa -3'
miRNA:   3'- -GGGCU--GA--UGCGGCUGCa--UGCaACGGc -5'
8174 5' -55 NC_001978.2 + 32654 0.66 0.688422
Target:  5'- gCCGACUgACGCUGACGcccUGgGggaaGCCGc -3'
miRNA:   3'- gGGCUGA-UGCGGCUGC---AUgCaa--CGGC- -5'
8174 5' -55 NC_001978.2 + 31318 0.72 0.385197
Target:  5'- aCUCGACguugGCGCCGACGcgcugaguggugACGgugugGCCGg -3'
miRNA:   3'- -GGGCUGa---UGCGGCUGCa-----------UGCaa---CGGC- -5'
8174 5' -55 NC_001978.2 + 30688 0.76 0.212223
Target:  5'- aCCCGACUgaGCGCCGguACGUGCucgacgcccUUGCCGu -3'
miRNA:   3'- -GGGCUGA--UGCGGC--UGCAUGc--------AACGGC- -5'
8174 5' -55 NC_001978.2 + 30573 0.7 0.463036
Target:  5'- cCCCGug-ACGCCGAagccCGUACGUgcgUGCuCGa -3'
miRNA:   3'- -GGGCugaUGCGGCU----GCAUGCA---ACG-GC- -5'
8174 5' -55 NC_001978.2 + 30428 0.68 0.61156
Target:  5'- gUCGGCUgagaacgcggACGCCGACGguucCcUUGCCGa -3'
miRNA:   3'- gGGCUGA----------UGCGGCUGCau--GcAACGGC- -5'
8174 5' -55 NC_001978.2 + 30309 0.67 0.622565
Target:  5'- -aCGGCguuuuCGUCGGCcccgGCGUUGCCGu -3'
miRNA:   3'- ggGCUGau---GCGGCUGca--UGCAACGGC- -5'
8174 5' -55 NC_001978.2 + 29723 0.67 0.655592
Target:  5'- aCCCGGCggaGCCuGgGaACGUUGCUGa -3'
miRNA:   3'- -GGGCUGaugCGGcUgCaUGCAACGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.