miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8174 5' -55 NC_001978.2 + 4784 0.68 0.553742
Target:  5'- gCCGACUgaagaGCGCgauucccagccggaCGGCG-ACGUUGCCc -3'
miRNA:   3'- gGGCUGA-----UGCG--------------GCUGCaUGCAACGGc -5'
8174 5' -55 NC_001978.2 + 5615 0.66 0.699272
Target:  5'- uCCUGACggacGCGaCCGGCGccaACGcUGCCu -3'
miRNA:   3'- -GGGCUGa---UGC-GGCUGCa--UGCaACGGc -5'
8174 5' -55 NC_001978.2 + 5875 0.69 0.53551
Target:  5'- gUCCGGg-GCGCCGACGguaagaGCGgacUGCCa -3'
miRNA:   3'- -GGGCUgaUGCGGCUGCa-----UGCa--ACGGc -5'
8174 5' -55 NC_001978.2 + 6702 0.66 0.699272
Target:  5'- aCCGGCUacguagaagcgcACGCCGuuGUcACGacGCCGg -3'
miRNA:   3'- gGGCUGA------------UGCGGCugCA-UGCaaCGGC- -5'
8174 5' -55 NC_001978.2 + 7834 0.68 0.61156
Target:  5'- gCCgGGCaggAUGCCGAaGaACGUUGCCu -3'
miRNA:   3'- -GGgCUGa--UGCGGCUgCaUGCAACGGc -5'
8174 5' -55 NC_001978.2 + 8411 0.69 0.503882
Target:  5'- -gCGGCaaUACGCCGuuCGUAaGUUGCCGc -3'
miRNA:   3'- ggGCUG--AUGCGGCu-GCAUgCAACGGC- -5'
8174 5' -55 NC_001978.2 + 8546 0.69 0.524884
Target:  5'- cCCCGAUgcuucGCGCCauGGCGUAUGUcGUCa -3'
miRNA:   3'- -GGGCUGa----UGCGG--CUGCAUGCAaCGGc -5'
8174 5' -55 NC_001978.2 + 9075 0.65 0.731383
Target:  5'- aCCGGCgccaAUGCCGACG-GCGauagcGCCa -3'
miRNA:   3'- gGGCUGa---UGCGGCUGCaUGCaa---CGGc -5'
8174 5' -55 NC_001978.2 + 9883 0.67 0.644591
Target:  5'- gCCGACUucgccGCGCCGuCG-ACcUUGCCc -3'
miRNA:   3'- gGGCUGA-----UGCGGCuGCaUGcAACGGc -5'
8174 5' -55 NC_001978.2 + 9981 0.69 0.53551
Target:  5'- gUCGACUAUGgCGACGgucgGCGgcuucgUGUCGg -3'
miRNA:   3'- gGGCUGAUGCgGCUGCa---UGCa-----ACGGC- -5'
8174 5' -55 NC_001978.2 + 12565 0.72 0.343828
Target:  5'- aCCGGgaACGCCGACGagACGgcagcacUGCCGc -3'
miRNA:   3'- gGGCUgaUGCGGCUGCa-UGCa------ACGGC- -5'
8174 5' -55 NC_001978.2 + 12899 0.68 0.578687
Target:  5'- gCCGACgccaccCGCCGACGUGC-UU-CCGu -3'
miRNA:   3'- gGGCUGau----GCGGCUGCAUGcAAcGGC- -5'
8174 5' -55 NC_001978.2 + 13198 0.66 0.710056
Target:  5'- aCCCGACUGgggcggcuUGCUGugGaccACGacgGCCGa -3'
miRNA:   3'- -GGGCUGAU--------GCGGCugCa--UGCaa-CGGC- -5'
8174 5' -55 NC_001978.2 + 14873 0.66 0.688422
Target:  5'- aCCGGucACGCCGACGUAauCGgcGCg- -3'
miRNA:   3'- gGGCUgaUGCGGCUGCAU--GCaaCGgc -5'
8174 5' -55 NC_001978.2 + 14936 0.68 0.578687
Target:  5'- gCCGAUUACGUCGGCGUGa----CCGg -3'
miRNA:   3'- gGGCUGAUGCGGCUGCAUgcaacGGC- -5'
8174 5' -55 NC_001978.2 + 15014 0.66 0.720764
Target:  5'- uUCGGCUuCGUCG-CGccaUACGUUGCCc -3'
miRNA:   3'- gGGCUGAuGCGGCuGC---AUGCAACGGc -5'
8174 5' -55 NC_001978.2 + 15388 0.67 0.655592
Target:  5'- --aGACgaACGCCGACGUugcCGUUGgCGu -3'
miRNA:   3'- gggCUGa-UGCGGCUGCAu--GCAACgGC- -5'
8174 5' -55 NC_001978.2 + 15503 1.11 0.00076
Target:  5'- aCCCGACUACGCCGACGUACGUUGCCGu -3'
miRNA:   3'- -GGGCUGAUGCGGCUGCAUGCAACGGC- -5'
8174 5' -55 NC_001978.2 + 15947 0.68 0.556979
Target:  5'- gCgCGACggGCGCCGACucgACGUUcCCGg -3'
miRNA:   3'- -GgGCUGa-UGCGGCUGca-UGCAAcGGC- -5'
8174 5' -55 NC_001978.2 + 16300 0.66 0.688422
Target:  5'- aCCCGGCUucguguUGaCCGACGUcacgGCGUucggGUCGg -3'
miRNA:   3'- -GGGCUGAu-----GC-GGCUGCA----UGCAa---CGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.