miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8174 5' -55 NC_001978.2 + 30428 0.68 0.61156
Target:  5'- gUCGGCUgagaacgcggACGCCGACGguucCcUUGCCGa -3'
miRNA:   3'- gGGCUGA----------UGCGGCUGCau--GcAACGGC- -5'
8174 5' -55 NC_001978.2 + 23801 0.7 0.462037
Target:  5'- gCCGACUaguggcaGCGCuCGACccgGCGUcGCCGg -3'
miRNA:   3'- gGGCUGA-------UGCG-GCUGca-UGCAaCGGC- -5'
8174 5' -55 NC_001978.2 + 30573 0.7 0.463036
Target:  5'- cCCCGug-ACGCCGAagccCGUACGUgcgUGCuCGa -3'
miRNA:   3'- -GGGCugaUGCGGCU----GCAUGCA---ACG-GC- -5'
8174 5' -55 NC_001978.2 + 8546 0.69 0.524884
Target:  5'- cCCCGAUgcuucGCGCCauGGCGUAUGUcGUCa -3'
miRNA:   3'- -GGGCUGa----UGCGG--CUGCAUGCAaCGGc -5'
8174 5' -55 NC_001978.2 + 9981 0.69 0.53551
Target:  5'- gUCGACUAUGgCGACGgucgGCGgcuucgUGUCGg -3'
miRNA:   3'- gGGCUGAUGCgGCUGCa---UGCa-----ACGGC- -5'
8174 5' -55 NC_001978.2 + 4784 0.68 0.553742
Target:  5'- gCCGACUgaagaGCGCgauucccagccggaCGGCG-ACGUUGCCc -3'
miRNA:   3'- gGGCUGA-----UGCG--------------GCUGCaUGCAACGGc -5'
8174 5' -55 NC_001978.2 + 15947 0.68 0.556979
Target:  5'- gCgCGACggGCGCCGACucgACGUUcCCGg -3'
miRNA:   3'- -GgGCUGa-UGCGGCUGca-UGCAAcGGC- -5'
8174 5' -55 NC_001978.2 + 19713 0.68 0.556979
Target:  5'- gCUCGACUACGCCaACGcgaagAC--UGCCGa -3'
miRNA:   3'- -GGGCUGAUGCGGcUGCa----UGcaACGGC- -5'
8174 5' -55 NC_001978.2 + 35992 0.68 0.578687
Target:  5'- cCCCggaGACUGcCGCCGACccggGCGUUGUg- -3'
miRNA:   3'- -GGG---CUGAU-GCGGCUGca--UGCAACGgc -5'
8174 5' -55 NC_001978.2 + 36056 0.7 0.453096
Target:  5'- gCCCuACU-CGCCGACGUGCuacacggGCCa -3'
miRNA:   3'- -GGGcUGAuGCGGCUGCAUGcaa----CGGc -5'
8174 5' -55 NC_001978.2 + 25406 0.71 0.424947
Target:  5'- gCCGACUACGCCGcCGaccgguucgggcucgACGUcGCCc -3'
miRNA:   3'- gGGCUGAUGCGGCuGCa--------------UGCAaCGGc -5'
8174 5' -55 NC_001978.2 + 33835 0.71 0.423995
Target:  5'- gCUCGACUgucGgGCCGACG-GCGUuacccgggUGCCGa -3'
miRNA:   3'- -GGGCUGA---UgCGGCUGCaUGCA--------ACGGC- -5'
8174 5' -55 NC_001978.2 + 19364 0.79 0.141213
Target:  5'- uCCCGACggACGCCGACGUgACGUgcaagcggUGCgCGa -3'
miRNA:   3'- -GGGCUGa-UGCGGCUGCA-UGCA--------ACG-GC- -5'
8174 5' -55 NC_001978.2 + 30688 0.76 0.212223
Target:  5'- aCCCGACUgaGCGCCGguACGUGCucgacgcccUUGCCGu -3'
miRNA:   3'- -GGGCUGA--UGCGGC--UGCAUGc--------AACGGC- -5'
8174 5' -55 NC_001978.2 + 17840 0.74 0.275162
Target:  5'- cUCCGGCaaggACGCUGACG-GCG-UGCCGg -3'
miRNA:   3'- -GGGCUGa---UGCGGCUGCaUGCaACGGC- -5'
8174 5' -55 NC_001978.2 + 21496 0.72 0.343828
Target:  5'- gCUCGACUcCGCCGACGUGCaccccgUGCg- -3'
miRNA:   3'- -GGGCUGAuGCGGCUGCAUGca----ACGgc -5'
8174 5' -55 NC_001978.2 + 25498 0.72 0.343828
Target:  5'- gCCCGACUucgUGUCGACGU-CGUUcGCCc -3'
miRNA:   3'- -GGGCUGAu--GCGGCUGCAuGCAA-CGGc -5'
8174 5' -55 NC_001978.2 + 16907 0.72 0.361527
Target:  5'- uCCCGACacgcugaaucaggcaGCGuCCGACGUGC-UUGCCa -3'
miRNA:   3'- -GGGCUGa--------------UGC-GGCUGCAUGcAACGGc -5'
8174 5' -55 NC_001978.2 + 24387 0.72 0.378078
Target:  5'- gCCCGacGCUGCGCCugcccugggcGACGUGCGagcGCUGa -3'
miRNA:   3'- -GGGC--UGAUGCGG----------CUGCAUGCaa-CGGC- -5'
8174 5' -55 NC_001978.2 + 17586 0.72 0.378078
Target:  5'- aCCGGCgACGuuGGCG-ACGUUGgCGg -3'
miRNA:   3'- gGGCUGaUGCggCUGCaUGCAACgGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.