miRNA display CGI


Results 21 - 40 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8174 5' -55 NC_001978.2 + 17840 0.74 0.275162
Target:  5'- cUCCGGCaaggACGCUGACG-GCG-UGCCGg -3'
miRNA:   3'- -GGGCUGa---UGCGGCUGCaUGCaACGGC- -5'
8174 5' -55 NC_001978.2 + 21496 0.72 0.343828
Target:  5'- gCUCGACUcCGCCGACGUGCaccccgUGCg- -3'
miRNA:   3'- -GGGCUGAuGCGGCUGCAUGca----ACGgc -5'
8174 5' -55 NC_001978.2 + 25498 0.72 0.343828
Target:  5'- gCCCGACUucgUGUCGACGU-CGUUcGCCc -3'
miRNA:   3'- -GGGCUGAu--GCGGCUGCAuGCAA-CGGc -5'
8174 5' -55 NC_001978.2 + 16907 0.72 0.361527
Target:  5'- uCCCGACacgcugaaucaggcaGCGuCCGACGUGC-UUGCCa -3'
miRNA:   3'- -GGGCUGa--------------UGC-GGCUGCAUGcAACGGc -5'
8174 5' -55 NC_001978.2 + 24387 0.72 0.378078
Target:  5'- gCCCGacGCUGCGCCugcccugggcGACGUGCGagcGCUGa -3'
miRNA:   3'- -GGGC--UGAUGCGG----------CUGCAUGCaa-CGGC- -5'
8174 5' -55 NC_001978.2 + 17586 0.72 0.378078
Target:  5'- aCCGGCgACGuuGGCG-ACGUUGgCGg -3'
miRNA:   3'- gGGCUGaUGCggCUGCaUGCAACgGC- -5'
8174 5' -55 NC_001978.2 + 8546 0.69 0.524884
Target:  5'- cCCCGAUgcuucGCGCCauGGCGUAUGUcGUCa -3'
miRNA:   3'- -GGGCUGa----UGCGG--CUGCAUGCAaCGGc -5'
8174 5' -55 NC_001978.2 + 30573 0.7 0.463036
Target:  5'- cCCCGug-ACGCCGAagccCGUACGUgcgUGCuCGa -3'
miRNA:   3'- -GGGCugaUGCGGCU----GCAUGCA---ACG-GC- -5'
8174 5' -55 NC_001978.2 + 23801 0.7 0.462037
Target:  5'- gCCGACUaguggcaGCGCuCGACccgGCGUcGCCGg -3'
miRNA:   3'- gGGCUGA-------UGCG-GCUGca-UGCAaCGGC- -5'
8174 5' -55 NC_001978.2 + 36056 0.7 0.453096
Target:  5'- gCCCuACU-CGCCGACGUGCuacacggGCCa -3'
miRNA:   3'- -GGGcUGAuGCGGCUGCAUGcaa----CGGc -5'
8174 5' -55 NC_001978.2 + 25406 0.71 0.424947
Target:  5'- gCCGACUACGCCGcCGaccgguucgggcucgACGUcGCCc -3'
miRNA:   3'- gGGCUGAUGCGGCuGCa--------------UGCAaCGGc -5'
8174 5' -55 NC_001978.2 + 33835 0.71 0.423995
Target:  5'- gCUCGACUgucGgGCCGACG-GCGUuacccgggUGCCGa -3'
miRNA:   3'- -GGGCUGA---UgCGGCUGCaUGCA--------ACGGC- -5'
8174 5' -55 NC_001978.2 + 29723 0.67 0.655592
Target:  5'- aCCCGGCggaGCCuGgGaACGUUGCUGa -3'
miRNA:   3'- -GGGCUGaugCGGcUgCaUGCAACGGC- -5'
8174 5' -55 NC_001978.2 + 17422 0.66 0.688422
Target:  5'- cUCCGugUGCgaGCCGcCcc-CGUUGCCGa -3'
miRNA:   3'- -GGGCugAUG--CGGCuGcauGCAACGGC- -5'
8174 5' -55 NC_001978.2 + 16300 0.66 0.688422
Target:  5'- aCCCGGCUucguguUGaCCGACGUcacgGCGUucggGUCGg -3'
miRNA:   3'- -GGGCUGAu-----GC-GGCUGCA----UGCAa---CGGC- -5'
8174 5' -55 NC_001978.2 + 15014 0.66 0.720764
Target:  5'- uUCGGCUuCGUCG-CGccaUACGUUGCCc -3'
miRNA:   3'- gGGCUGAuGCGGCuGC---AUGCAACGGc -5'
8174 5' -55 NC_001978.2 + 37760 0.66 0.720764
Target:  5'- aCCCagggGCGCaCGACGggcGgGUUGCCGu -3'
miRNA:   3'- -GGGcugaUGCG-GCUGCa--UgCAACGGC- -5'
8174 5' -55 NC_001978.2 + 33631 0.66 0.720764
Target:  5'- aCCCGACggucacgGCGCCGACaaggGCGacacCCGc -3'
miRNA:   3'- -GGGCUGa------UGCGGCUGca--UGCaac-GGC- -5'
8174 5' -55 NC_001978.2 + 37949 0.65 0.731383
Target:  5'- aCCCG-CUcACGCgCGACGUuguacgggACGgcGCCc -3'
miRNA:   3'- -GGGCuGA-UGCG-GCUGCA--------UGCaaCGGc -5'
8174 5' -55 NC_001978.2 + 24306 0.73 0.33481
Target:  5'- gCCCGucacauuGCUGCGCaacaGGCGUGCGUguucUGUCGu -3'
miRNA:   3'- -GGGC-------UGAUGCGg---CUGCAUGCA----ACGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.