miRNA display CGI


Results 21 - 40 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8174 5' -55 NC_001978.2 + 16762 0.7 0.483252
Target:  5'- gCgGAacgGCGCCGACaUGCGUUGaCCGc -3'
miRNA:   3'- gGgCUga-UGCGGCUGcAUGCAAC-GGC- -5'
8174 5' -55 NC_001978.2 + 16907 0.72 0.361527
Target:  5'- uCCCGACacgcugaaucaggcaGCGuCCGACGUGC-UUGCCa -3'
miRNA:   3'- -GGGCUGa--------------UGC-GGCUGCAUGcAACGGc -5'
8174 5' -55 NC_001978.2 + 17422 0.66 0.688422
Target:  5'- cUCCGugUGCgaGCCGcCcc-CGUUGCCGa -3'
miRNA:   3'- -GGGCugAUG--CGGCuGcauGCAACGGC- -5'
8174 5' -55 NC_001978.2 + 17586 0.72 0.378078
Target:  5'- aCCGGCgACGuuGGCG-ACGUUGgCGg -3'
miRNA:   3'- gGGCUGaUGCggCUGCaUGCAACgGC- -5'
8174 5' -55 NC_001978.2 + 17840 0.74 0.275162
Target:  5'- cUCCGGCaaggACGCUGACG-GCG-UGCCGg -3'
miRNA:   3'- -GGGCUGa---UGCGGCUGCaUGCaACGGC- -5'
8174 5' -55 NC_001978.2 + 17910 0.72 0.352178
Target:  5'- gCCCGGC-ACGCCGucaGCGU-CcUUGCCGg -3'
miRNA:   3'- -GGGCUGaUGCGGC---UGCAuGcAACGGC- -5'
8174 5' -55 NC_001978.2 + 18378 0.69 0.524884
Target:  5'- gCCCaACUcaACGCgGcGCGUGCGUaguUGCCGc -3'
miRNA:   3'- -GGGcUGA--UGCGgC-UGCAUGCA---ACGGC- -5'
8174 5' -55 NC_001978.2 + 18806 0.65 0.730326
Target:  5'- cCCCGGCUuuuggguGCGCgCGGCGUuccccgcuaucgACGcUGCgGa -3'
miRNA:   3'- -GGGCUGA-------UGCG-GCUGCA------------UGCaACGgC- -5'
8174 5' -55 NC_001978.2 + 19364 0.79 0.141213
Target:  5'- uCCCGACggACGCCGACGUgACGUgcaagcggUGCgCGa -3'
miRNA:   3'- -GGGCUGa-UGCGGCUGCA-UGCA--------ACG-GC- -5'
8174 5' -55 NC_001978.2 + 19713 0.68 0.556979
Target:  5'- gCUCGACUACGCCaACGcgaagAC--UGCCGa -3'
miRNA:   3'- -GGGCUGAUGCGGcUGCa----UGcaACGGC- -5'
8174 5' -55 NC_001978.2 + 19924 0.67 0.622565
Target:  5'- cCCCGGCacgGCGCCaauGCGcACGUcGCCc -3'
miRNA:   3'- -GGGCUGa--UGCGGc--UGCaUGCAaCGGc -5'
8174 5' -55 NC_001978.2 + 21496 0.72 0.343828
Target:  5'- gCUCGACUcCGCCGACGUGCaccccgUGCg- -3'
miRNA:   3'- -GGGCUGAuGCGGCUGCAUGca----ACGgc -5'
8174 5' -55 NC_001978.2 + 22725 0.67 0.644591
Target:  5'- uCCUGGCauuCGUCGGCGU-CGUguucgucgcUGCCGu -3'
miRNA:   3'- -GGGCUGau-GCGGCUGCAuGCA---------ACGGC- -5'
8174 5' -55 NC_001978.2 + 23801 0.7 0.462037
Target:  5'- gCCGACUaguggcaGCGCuCGACccgGCGUcGCCGg -3'
miRNA:   3'- gGGCUGA-------UGCG-GCUGca-UGCAaCGGC- -5'
8174 5' -55 NC_001978.2 + 23878 0.7 0.483252
Target:  5'- uUCCGGCgACGCCGGguCGaGCGcUGCCa -3'
miRNA:   3'- -GGGCUGaUGCGGCU--GCaUGCaACGGc -5'
8174 5' -55 NC_001978.2 + 24306 0.73 0.33481
Target:  5'- gCCCGucacauuGCUGCGCaacaGGCGUGCGUguucUGUCGu -3'
miRNA:   3'- -GGGC-------UGAUGCGg---CUGCAUGCA----ACGGC- -5'
8174 5' -55 NC_001978.2 + 24387 0.72 0.378078
Target:  5'- gCCCGacGCUGCGCCugcccugggcGACGUGCGagcGCUGa -3'
miRNA:   3'- -GGGC--UGAUGCGG----------CUGCAUGCaa-CGGC- -5'
8174 5' -55 NC_001978.2 + 24645 0.69 0.53551
Target:  5'- gCCGACacaUAUGCCGACcaugACGccGCCGa -3'
miRNA:   3'- gGGCUG---AUGCGGCUGca--UGCaaCGGC- -5'
8174 5' -55 NC_001978.2 + 25311 0.69 0.546211
Target:  5'- gCCGACggaGCUGACG-ACGUcGCCc -3'
miRNA:   3'- gGGCUGaugCGGCUGCaUGCAaCGGc -5'
8174 5' -55 NC_001978.2 + 25406 0.71 0.424947
Target:  5'- gCCGACUACGCCGcCGaccgguucgggcucgACGUcGCCc -3'
miRNA:   3'- gGGCUGAUGCGGCuGCa--------------UGCAaCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.