Results 1 - 20 of 63 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8174 | 5' | -55 | NC_001978.2 | + | 9075 | 0.65 | 0.731383 |
Target: 5'- aCCGGCgccaAUGCCGACG-GCGauagcGCCa -3' miRNA: 3'- gGGCUGa---UGCGGCUGCaUGCaa---CGGc -5' |
|||||||
8174 | 5' | -55 | NC_001978.2 | + | 25311 | 0.69 | 0.546211 |
Target: 5'- gCCGACggaGCUGACG-ACGUcGCCc -3' miRNA: 3'- gGGCUGaugCGGCUGCaUGCAaCGGc -5' |
|||||||
8174 | 5' | -55 | NC_001978.2 | + | 5875 | 0.69 | 0.53551 |
Target: 5'- gUCCGGg-GCGCCGACGguaagaGCGgacUGCCa -3' miRNA: 3'- -GGGCUgaUGCGGCUGCa-----UGCa--ACGGc -5' |
|||||||
8174 | 5' | -55 | NC_001978.2 | + | 24306 | 0.73 | 0.33481 |
Target: 5'- gCCCGucacauuGCUGCGCaacaGGCGUGCGUguucUGUCGu -3' miRNA: 3'- -GGGC-------UGAUGCGg---CUGCAUGCA----ACGGC- -5' |
|||||||
8174 | 5' | -55 | NC_001978.2 | + | 15014 | 0.66 | 0.720764 |
Target: 5'- uUCGGCUuCGUCG-CGccaUACGUUGCCc -3' miRNA: 3'- gGGCUGAuGCGGCuGC---AUGCAACGGc -5' |
|||||||
8174 | 5' | -55 | NC_001978.2 | + | 16300 | 0.66 | 0.688422 |
Target: 5'- aCCCGGCUucguguUGaCCGACGUcacgGCGUucggGUCGg -3' miRNA: 3'- -GGGCUGAu-----GC-GGCUGCA----UGCAa---CGGC- -5' |
|||||||
8174 | 5' | -55 | NC_001978.2 | + | 29723 | 0.67 | 0.655592 |
Target: 5'- aCCCGGCggaGCCuGgGaACGUUGCUGa -3' miRNA: 3'- -GGGCUGaugCGGcUgCaUGCAACGGC- -5' |
|||||||
8174 | 5' | -55 | NC_001978.2 | + | 15388 | 0.67 | 0.655592 |
Target: 5'- --aGACgaACGCCGACGUugcCGUUGgCGu -3' miRNA: 3'- gggCUGa-UGCGGCUGCAu--GCAACgGC- -5' |
|||||||
8174 | 5' | -55 | NC_001978.2 | + | 19924 | 0.67 | 0.622565 |
Target: 5'- cCCCGGCacgGCGCCaauGCGcACGUcGCCc -3' miRNA: 3'- -GGGCUGa--UGCGGc--UGCaUGCAaCGGc -5' |
|||||||
8174 | 5' | -55 | NC_001978.2 | + | 14936 | 0.68 | 0.578687 |
Target: 5'- gCCGAUUACGUCGGCGUGa----CCGg -3' miRNA: 3'- gGGCUGAUGCGGCUGCAUgcaacGGC- -5' |
|||||||
8174 | 5' | -55 | NC_001978.2 | + | 40279 | 0.68 | 0.61156 |
Target: 5'- uCCCGggugucucGCUACGCCG-C-UACGUcuuccgUGCCGu -3' miRNA: 3'- -GGGC--------UGAUGCGGCuGcAUGCA------ACGGC- -5' |
|||||||
8174 | 5' | -55 | NC_001978.2 | + | 30309 | 0.67 | 0.622565 |
Target: 5'- -aCGGCguuuuCGUCGGCcccgGCGUUGCCGu -3' miRNA: 3'- ggGCUGau---GCGGCUGca--UGCAACGGC- -5' |
|||||||
8174 | 5' | -55 | NC_001978.2 | + | 37949 | 0.65 | 0.731383 |
Target: 5'- aCCCG-CUcACGCgCGACGUuguacgggACGgcGCCc -3' miRNA: 3'- -GGGCuGA-UGCG-GCUGCA--------UGCaaCGGc -5' |
|||||||
8174 | 5' | -55 | NC_001978.2 | + | 33215 | 0.68 | 0.589612 |
Target: 5'- uCCCGAauCUcaGCGUCGGCGgcaACG-UGCCa -3' miRNA: 3'- -GGGCU--GA--UGCGGCUGCa--UGCaACGGc -5' |
|||||||
8174 | 5' | -55 | NC_001978.2 | + | 33631 | 0.66 | 0.720764 |
Target: 5'- aCCCGACggucacgGCGCCGACaaggGCGacacCCGc -3' miRNA: 3'- -GGGCUGa------UGCGGCUGca--UGCaac-GGC- -5' |
|||||||
8174 | 5' | -55 | NC_001978.2 | + | 9883 | 0.67 | 0.644591 |
Target: 5'- gCCGACUucgccGCGCCGuCG-ACcUUGCCc -3' miRNA: 3'- gGGCUGA-----UGCGGCuGCaUGcAACGGc -5' |
|||||||
8174 | 5' | -55 | NC_001978.2 | + | 12899 | 0.68 | 0.578687 |
Target: 5'- gCCGACgccaccCGCCGACGUGC-UU-CCGu -3' miRNA: 3'- gGGCUGau----GCGGCUGCAUGcAAcGGC- -5' |
|||||||
8174 | 5' | -55 | NC_001978.2 | + | 24645 | 0.69 | 0.53551 |
Target: 5'- gCCGACacaUAUGCCGACcaugACGccGCCGa -3' miRNA: 3'- gGGCUG---AUGCGGCUGca--UGCaaCGGC- -5' |
|||||||
8174 | 5' | -55 | NC_001978.2 | + | 37760 | 0.66 | 0.720764 |
Target: 5'- aCCCagggGCGCaCGACGggcGgGUUGCCGu -3' miRNA: 3'- -GGGcugaUGCG-GCUGCa--UgCAACGGC- -5' |
|||||||
8174 | 5' | -55 | NC_001978.2 | + | 17422 | 0.66 | 0.688422 |
Target: 5'- cUCCGugUGCgaGCCGcCcc-CGUUGCCGa -3' miRNA: 3'- -GGGCugAUG--CGGCuGcauGCAACGGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home