miRNA display CGI


Results 21 - 40 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8174 5' -55 NC_001978.2 + 9883 0.67 0.644591
Target:  5'- gCCGACUucgccGCGCCGuCG-ACcUUGCCc -3'
miRNA:   3'- gGGCUGA-----UGCGGCuGCaUGcAACGGc -5'
8174 5' -55 NC_001978.2 + 19924 0.67 0.622565
Target:  5'- cCCCGGCacgGCGCCaauGCGcACGUcGCCc -3'
miRNA:   3'- -GGGCUGa--UGCGGc--UGCaUGCAaCGGc -5'
8174 5' -55 NC_001978.2 + 30309 0.67 0.622565
Target:  5'- -aCGGCguuuuCGUCGGCcccgGCGUUGCCGu -3'
miRNA:   3'- ggGCUGau---GCGGCUGca--UGCAACGGC- -5'
8174 5' -55 NC_001978.2 + 30428 0.68 0.61156
Target:  5'- gUCGGCUgagaacgcggACGCCGACGguucCcUUGCCGa -3'
miRNA:   3'- gGGCUGA----------UGCGGCUGCau--GcAACGGC- -5'
8174 5' -55 NC_001978.2 + 40279 0.68 0.61156
Target:  5'- uCCCGggugucucGCUACGCCG-C-UACGUcuuccgUGCCGu -3'
miRNA:   3'- -GGGC--------UGAUGCGGCuGcAUGCA------ACGGC- -5'
8174 5' -55 NC_001978.2 + 7834 0.68 0.61156
Target:  5'- gCCgGGCaggAUGCCGAaGaACGUUGCCu -3'
miRNA:   3'- -GGgCUGa--UGCGGCUgCaUGCAACGGc -5'
8174 5' -55 NC_001978.2 + 33215 0.68 0.589612
Target:  5'- uCCCGAauCUcaGCGUCGGCGgcaACG-UGCCa -3'
miRNA:   3'- -GGGCU--GA--UGCGGCUGCa--UGCaACGGc -5'
8174 5' -55 NC_001978.2 + 35992 0.68 0.578687
Target:  5'- cCCCggaGACUGcCGCCGACccggGCGUUGUg- -3'
miRNA:   3'- -GGG---CUGAU-GCGGCUGca--UGCAACGgc -5'
8174 5' -55 NC_001978.2 + 12899 0.68 0.578687
Target:  5'- gCCGACgccaccCGCCGACGUGC-UU-CCGu -3'
miRNA:   3'- gGGCUGau----GCGGCUGCAUGcAAcGGC- -5'
8174 5' -55 NC_001978.2 + 14936 0.68 0.578687
Target:  5'- gCCGAUUACGUCGGCGUGa----CCGg -3'
miRNA:   3'- gGGCUGAUGCGGCUGCAUgcaacGGC- -5'
8174 5' -55 NC_001978.2 + 19713 0.68 0.556979
Target:  5'- gCUCGACUACGCCaACGcgaagAC--UGCCGa -3'
miRNA:   3'- -GGGCUGAUGCGGcUGCa----UGcaACGGC- -5'
8174 5' -55 NC_001978.2 + 15947 0.68 0.556979
Target:  5'- gCgCGACggGCGCCGACucgACGUUcCCGg -3'
miRNA:   3'- -GgGCUGa-UGCGGCUGca-UGCAAcGGC- -5'
8174 5' -55 NC_001978.2 + 4784 0.68 0.553742
Target:  5'- gCCGACUgaagaGCGCgauucccagccggaCGGCG-ACGUUGCCc -3'
miRNA:   3'- gGGCUGA-----UGCG--------------GCUGCaUGCAACGGc -5'
8174 5' -55 NC_001978.2 + 25311 0.69 0.546211
Target:  5'- gCCGACggaGCUGACG-ACGUcGCCc -3'
miRNA:   3'- gGGCUGaugCGGCUGCaUGCAaCGGc -5'
8174 5' -55 NC_001978.2 + 24645 0.69 0.53551
Target:  5'- gCCGACacaUAUGCCGACcaugACGccGCCGa -3'
miRNA:   3'- gGGCUG---AUGCGGCUGca--UGCaaCGGC- -5'
8174 5' -55 NC_001978.2 + 5875 0.69 0.53551
Target:  5'- gUCCGGg-GCGCCGACGguaagaGCGgacUGCCa -3'
miRNA:   3'- -GGGCUgaUGCGGCUGCa-----UGCa--ACGGc -5'
8174 5' -55 NC_001978.2 + 9981 0.69 0.53551
Target:  5'- gUCGACUAUGgCGACGgucgGCGgcuucgUGUCGg -3'
miRNA:   3'- gGGCUGAUGCgGCUGCa---UGCa-----ACGGC- -5'
8174 5' -55 NC_001978.2 + 8546 0.69 0.524884
Target:  5'- cCCCGAUgcuucGCGCCauGGCGUAUGUcGUCa -3'
miRNA:   3'- -GGGCUGa----UGCGG--CUGCAUGCAaCGGc -5'
8174 5' -55 NC_001978.2 + 18378 0.69 0.524884
Target:  5'- gCCCaACUcaACGCgGcGCGUGCGUaguUGCCGc -3'
miRNA:   3'- -GGGcUGA--UGCGgC-UGCAUGCA---ACGGC- -5'
8174 5' -55 NC_001978.2 + 8411 0.69 0.503882
Target:  5'- -gCGGCaaUACGCCGuuCGUAaGUUGCCGc -3'
miRNA:   3'- ggGCUG--AUGCGGCu-GCAUgCAACGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.