miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8184 3' -48 NC_001978.2 + 3049 0.66 0.967919
Target:  5'- cUCGCCGGAaGCcgCAACGGCGc--- -3'
miRNA:   3'- cAGCGGCUUcUGaaGUUGCUGUaacu -5'
8184 3' -48 NC_001978.2 + 36136 0.66 0.967919
Target:  5'- -cCGCCGGucccguuugGGACUUgAGCGGCGg--- -3'
miRNA:   3'- caGCGGCU---------UCUGAAgUUGCUGUaacu -5'
8184 3' -48 NC_001978.2 + 35702 0.66 0.956001
Target:  5'- --aGCCGGAGACg--GACGACAc--- -3'
miRNA:   3'- cagCGGCUUCUGaagUUGCUGUaacu -5'
8184 3' -48 NC_001978.2 + 23630 0.66 0.956001
Target:  5'- -cUGCaCGAAGcCgaaGACGACGUUGAg -3'
miRNA:   3'- caGCG-GCUUCuGaagUUGCUGUAACU- -5'
8184 3' -48 NC_001978.2 + 7199 0.66 0.955558
Target:  5'- -aCGCCGGAGccgguucGCUUCugacGGCGGCGUUcGAc -3'
miRNA:   3'- caGCGGCUUC-------UGAAG----UUGCUGUAA-CU- -5'
8184 3' -48 NC_001978.2 + 8133 0.66 0.951435
Target:  5'- uUCGCCGGAagccuuguuGGCUUCAcgcACGGCcUUGu -3'
miRNA:   3'- cAGCGGCUU---------CUGAAGU---UGCUGuAACu -5'
8184 3' -48 NC_001978.2 + 27955 0.67 0.946563
Target:  5'- gGUCGacaCGAAGAUUaaGGCGACGcUGAu -3'
miRNA:   3'- -CAGCg--GCUUCUGAagUUGCUGUaACU- -5'
8184 3' -48 NC_001978.2 + 31664 0.67 0.946563
Target:  5'- uUCGCCGAcGACgcccuuuAUGACAUUGc -3'
miRNA:   3'- cAGCGGCUuCUGaagu---UGCUGUAACu -5'
8184 3' -48 NC_001978.2 + 12389 0.67 0.94138
Target:  5'- -gUGCCGAAGGCgUCGACcACGUUc- -3'
miRNA:   3'- caGCGGCUUCUGaAGUUGcUGUAAcu -5'
8184 3' -48 NC_001978.2 + 19034 0.67 0.930066
Target:  5'- -aCGCuCGAAGACcUCAACcgGAuCGUUGAc -3'
miRNA:   3'- caGCG-GCUUCUGaAGUUG--CU-GUAACU- -5'
8184 3' -48 NC_001978.2 + 2909 0.67 0.930066
Target:  5'- --gGCgGggGcACUccccagcgcUCGACGGCAUUGAg -3'
miRNA:   3'- cagCGgCuuC-UGA---------AGUUGCUGUAACU- -5'
8184 3' -48 NC_001978.2 + 13481 0.67 0.923932
Target:  5'- cUUGCCGAAGAUgaCGGCGGCu---- -3'
miRNA:   3'- cAGCGGCUUCUGaaGUUGCUGuaacu -5'
8184 3' -48 NC_001978.2 + 11831 0.68 0.91748
Target:  5'- -aCGCCGAAGGCUc---CGACAUUc- -3'
miRNA:   3'- caGCGGCUUCUGAaguuGCUGUAAcu -5'
8184 3' -48 NC_001978.2 + 17583 0.68 0.91071
Target:  5'- -gCGaCCGgcGACgUUGGCGACGUUGGc -3'
miRNA:   3'- caGC-GGCuuCUGaAGUUGCUGUAACU- -5'
8184 3' -48 NC_001978.2 + 30730 0.68 0.903626
Target:  5'- gGUCGCUGggGACcgUCAGC-ACGUc-- -3'
miRNA:   3'- -CAGCGGCuuCUGa-AGUUGcUGUAacu -5'
8184 3' -48 NC_001978.2 + 8460 0.68 0.89623
Target:  5'- uUCGCUGAccauuGACgagaUCGACGcCAUUGAa -3'
miRNA:   3'- cAGCGGCUu----CUGa---AGUUGCuGUAACU- -5'
8184 3' -48 NC_001978.2 + 21490 0.69 0.880523
Target:  5'- cGUCGCUGAGucCUUCAguACGGCGUg-- -3'
miRNA:   3'- -CAGCGGCUUcuGAAGU--UGCUGUAacu -5'
8184 3' -48 NC_001978.2 + 13809 0.69 0.879706
Target:  5'- cGUCGCUGAAGgacugcacgacguGCUUCGuCGGCAUg-- -3'
miRNA:   3'- -CAGCGGCUUC-------------UGAAGUuGCUGUAacu -5'
8184 3' -48 NC_001978.2 + 35807 0.69 0.86364
Target:  5'- -aCGCCGAAGAC---GACGGCAagguucUUGAc -3'
miRNA:   3'- caGCGGCUUCUGaagUUGCUGU------AACU- -5'
8184 3' -48 NC_001978.2 + 24088 0.69 0.854777
Target:  5'- gGUCGCCGAcguacaGGGCUUCAcccGCGuaguCAgUGAc -3'
miRNA:   3'- -CAGCGGCU------UCUGAAGU---UGCu---GUaACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.