miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8186 5' -56.9 NC_001978.2 + 21229 1.12 0.000276
Target:  5'- cAGCAUCAUUCGCGCUGCCGCCGACGCg -3'
miRNA:   3'- -UCGUAGUAAGCGCGACGGCGGCUGCG- -5'
8186 5' -56.9 NC_001978.2 + 33133 0.81 0.053787
Target:  5'- gGGCAagCGUUgGCacGUUGCCGCCGACGCu -3'
miRNA:   3'- -UCGUa-GUAAgCG--CGACGGCGGCUGCG- -5'
8186 5' -56.9 NC_001978.2 + 22738 0.79 0.081005
Target:  5'- cGGCGUCGUguUCGuCGCUGCCGUCGuCGg -3'
miRNA:   3'- -UCGUAGUA--AGC-GCGACGGCGGCuGCg -5'
8186 5' -56.9 NC_001978.2 + 17492 0.76 0.127781
Target:  5'- cAGCGcugccguUCGUguUCGUGUUGCCGCCGAcCGUg -3'
miRNA:   3'- -UCGU-------AGUA--AGCGCGACGGCGGCU-GCG- -5'
8186 5' -56.9 NC_001978.2 + 19862 0.74 0.164802
Target:  5'- uGCG-CAUUgGCGCcgUGCCggggGCCGACGCg -3'
miRNA:   3'- uCGUaGUAAgCGCG--ACGG----CGGCUGCG- -5'
8186 5' -56.9 NC_001978.2 + 29819 0.73 0.189029
Target:  5'- cGCAUCAcugugcaaaGCGCUGCCGUCGcACGg -3'
miRNA:   3'- uCGUAGUaag------CGCGACGGCGGC-UGCg -5'
8186 5' -56.9 NC_001978.2 + 38324 0.73 0.189029
Target:  5'- gGGCAUCcgcugaGgGUUGCCGCCGGgGCu -3'
miRNA:   3'- -UCGUAGuaag--CgCGACGGCGGCUgCG- -5'
8186 5' -56.9 NC_001978.2 + 22183 0.73 0.210615
Target:  5'- gGGCGUCAgaucagCGCGCacaCgGCCGACGUa -3'
miRNA:   3'- -UCGUAGUaa----GCGCGac-GgCGGCUGCG- -5'
8186 5' -56.9 NC_001978.2 + 1501 0.72 0.228169
Target:  5'- cGCGUCAaugagaagUUCGCGCUGCCacggaaggaGCCGGaacgGCu -3'
miRNA:   3'- uCGUAGU--------AAGCGCGACGG---------CGGCUg---CG- -5'
8186 5' -56.9 NC_001978.2 + 19419 0.72 0.233672
Target:  5'- cGGCGUCcgUCgggacguaGCGCuccgaugcccgguUGCCGCCGcACGCc -3'
miRNA:   3'- -UCGUAGuaAG--------CGCG-------------ACGGCGGC-UGCG- -5'
8186 5' -56.9 NC_001978.2 + 32336 0.72 0.23429
Target:  5'- cGGCGUCAcagaagCGCGCUGaagcguCCGCCGAacggcucgaCGCa -3'
miRNA:   3'- -UCGUAGUaa----GCGCGAC------GGCGGCU---------GCG- -5'
8186 5' -56.9 NC_001978.2 + 25136 0.72 0.23429
Target:  5'- gGGgGUUAUcUCGCGCUGUgcCCGGCGCa -3'
miRNA:   3'- -UCgUAGUA-AGCGCGACGgcGGCUGCG- -5'
8186 5' -56.9 NC_001978.2 + 15414 0.72 0.236777
Target:  5'- cGGCGUCGUuggCGCGCgcaccuauuccauggUGCUGCCGAaggacaCGCu -3'
miRNA:   3'- -UCGUAGUAa--GCGCG---------------ACGGCGGCU------GCG- -5'
8186 5' -56.9 NC_001978.2 + 29275 0.72 0.246945
Target:  5'- aGGaCGUCA--CGCGCUGCCGaCUGACa- -3'
miRNA:   3'- -UC-GUAGUaaGCGCGACGGC-GGCUGcg -5'
8186 5' -56.9 NC_001978.2 + 31336 0.71 0.265608
Target:  5'- cGGCGUUGgccgugacgaacUCGaCGUUGgCGCCGACGCg -3'
miRNA:   3'- -UCGUAGUa-----------AGC-GCGACgGCGGCUGCG- -5'
8186 5' -56.9 NC_001978.2 + 19346 0.71 0.295719
Target:  5'- gGGCAUCGga-GCGCUacgucccgacgGaCGCCGACGUg -3'
miRNA:   3'- -UCGUAGUaagCGCGA-----------CgGCGGCUGCG- -5'
8186 5' -56.9 NC_001978.2 + 5705 0.71 0.297968
Target:  5'- cGGCGUCAgccucaccgaaggcaGCGUUGgCGCCGGuCGCg -3'
miRNA:   3'- -UCGUAGUaag------------CGCGACgGCGGCU-GCG- -5'
8186 5' -56.9 NC_001978.2 + 8528 0.7 0.303269
Target:  5'- aGGCcg-GUUCGCGCcgUGCC-CCGAUGCu -3'
miRNA:   3'- -UCGuagUAAGCGCG--ACGGcGGCUGCG- -5'
8186 5' -56.9 NC_001978.2 + 22333 0.7 0.310965
Target:  5'- cGGCG----UCGgGUUGCCGUCGGCGUc -3'
miRNA:   3'- -UCGUaguaAGCgCGACGGCGGCUGCG- -5'
8186 5' -56.9 NC_001978.2 + 39777 0.7 0.310965
Target:  5'- gGGCGaaccuugUUGCGgaGCgCGCCGACGCc -3'
miRNA:   3'- -UCGUagua---AGCGCgaCG-GCGGCUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.