Results 1 - 20 of 62 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8186 | 5' | -56.9 | NC_001978.2 | + | 12850 | 0.67 | 0.473957 |
Target: 5'- uGGCGUCGgccguaUCGCGCuuaUGUCGUCGG-GCu -3' miRNA: 3'- -UCGUAGUa-----AGCGCG---ACGGCGGCUgCG- -5' |
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8186 | 5' | -56.9 | NC_001978.2 | + | 13578 | 0.69 | 0.376944 |
Target: 5'- cGGCGUCgacuccGUUCGCGCUGaCGCauggugugaacugUGACGUg -3' miRNA: 3'- -UCGUAG------UAAGCGCGACgGCG-------------GCUGCG- -5' |
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8186 | 5' | -56.9 | NC_001978.2 | + | 4764 | 0.69 | 0.377837 |
Target: 5'- cGUAUCggugaGUUCGCGCcGCCGaCUGAagaGCg -3' miRNA: 3'- uCGUAG-----UAAGCGCGaCGGC-GGCUg--CG- -5' |
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8186 | 5' | -56.9 | NC_001978.2 | + | 31690 | 0.68 | 0.395999 |
Target: 5'- uGCGUCGUUUgaGCGgUGCggauucgauuCGCgCGACGCg -3' miRNA: 3'- uCGUAGUAAG--CGCgACG----------GCG-GCUGCG- -5' |
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8186 | 5' | -56.9 | NC_001978.2 | + | 6793 | 0.68 | 0.414715 |
Target: 5'- aGGCcgC--UUGCGCUGCCGUgaACGCc -3' miRNA: 3'- -UCGuaGuaAGCGCGACGGCGgcUGCG- -5' |
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8186 | 5' | -56.9 | NC_001978.2 | + | 531 | 0.68 | 0.442793 |
Target: 5'- gGGCAUCGUUgcCGCugaagcccggaagGUUGCCGCCGGu-- -3' miRNA: 3'- -UCGUAGUAA--GCG-------------CGACGGCGGCUgcg -5' |
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8186 | 5' | -56.9 | NC_001978.2 | + | 39704 | 0.68 | 0.44378 |
Target: 5'- ----aCGUUgGCGCUucugugggaaGCCGcCCGACGCu -3' miRNA: 3'- ucguaGUAAgCGCGA----------CGGC-GGCUGCG- -5' |
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8186 | 5' | -56.9 | NC_001978.2 | + | 2184 | 0.67 | 0.453721 |
Target: 5'- cGCAUgGUcuuugggauUCGC-UUGCUGCCGACGa -3' miRNA: 3'- uCGUAgUA---------AGCGcGACGGCGGCUGCg -5' |
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8186 | 5' | -56.9 | NC_001978.2 | + | 12756 | 0.67 | 0.463781 |
Target: 5'- uGGUGUaCGUggCGaCGCUGCCGaCCGGCa- -3' miRNA: 3'- -UCGUA-GUAa-GC-GCGACGGC-GGCUGcg -5' |
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8186 | 5' | -56.9 | NC_001978.2 | + | 20392 | 0.69 | 0.360244 |
Target: 5'- aGGCcgaaGUCGagUCGCGCcgGUCgGCCGACGUc -3' miRNA: 3'- -UCG----UAGUa-AGCGCGa-CGG-CGGCUGCG- -5' |
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8186 | 5' | -56.9 | NC_001978.2 | + | 39777 | 0.7 | 0.310965 |
Target: 5'- gGGCGaaccuugUUGCGgaGCgCGCCGACGCc -3' miRNA: 3'- -UCGUagua---AGCGCgaCG-GCGGCUGCG- -5' |
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8186 | 5' | -56.9 | NC_001978.2 | + | 8528 | 0.7 | 0.303269 |
Target: 5'- aGGCcg-GUUCGCGCcgUGCC-CCGAUGCu -3' miRNA: 3'- -UCGuagUAAGCGCG--ACGGcGGCUGCG- -5' |
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8186 | 5' | -56.9 | NC_001978.2 | + | 33133 | 0.81 | 0.053787 |
Target: 5'- gGGCAagCGUUgGCacGUUGCCGCCGACGCu -3' miRNA: 3'- -UCGUa-GUAAgCG--CGACGGCGGCUGCG- -5' |
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8186 | 5' | -56.9 | NC_001978.2 | + | 22738 | 0.79 | 0.081005 |
Target: 5'- cGGCGUCGUguUCGuCGCUGCCGUCGuCGg -3' miRNA: 3'- -UCGUAGUA--AGC-GCGACGGCGGCuGCg -5' |
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8186 | 5' | -56.9 | NC_001978.2 | + | 19862 | 0.74 | 0.164802 |
Target: 5'- uGCG-CAUUgGCGCcgUGCCggggGCCGACGCg -3' miRNA: 3'- uCGUaGUAAgCGCG--ACGG----CGGCUGCG- -5' |
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8186 | 5' | -56.9 | NC_001978.2 | + | 29819 | 0.73 | 0.189029 |
Target: 5'- cGCAUCAcugugcaaaGCGCUGCCGUCGcACGg -3' miRNA: 3'- uCGUAGUaag------CGCGACGGCGGC-UGCg -5' |
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8186 | 5' | -56.9 | NC_001978.2 | + | 25136 | 0.72 | 0.23429 |
Target: 5'- gGGgGUUAUcUCGCGCUGUgcCCGGCGCa -3' miRNA: 3'- -UCgUAGUA-AGCGCGACGgcGGCUGCG- -5' |
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8186 | 5' | -56.9 | NC_001978.2 | + | 32336 | 0.72 | 0.23429 |
Target: 5'- cGGCGUCAcagaagCGCGCUGaagcguCCGCCGAacggcucgaCGCa -3' miRNA: 3'- -UCGUAGUaa----GCGCGAC------GGCGGCU---------GCG- -5' |
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8186 | 5' | -56.9 | NC_001978.2 | + | 15414 | 0.72 | 0.236777 |
Target: 5'- cGGCGUCGUuggCGCGCgcaccuauuccauggUGCUGCCGAaggacaCGCu -3' miRNA: 3'- -UCGUAGUAa--GCGCG---------------ACGGCGGCU------GCG- -5' |
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8186 | 5' | -56.9 | NC_001978.2 | + | 19346 | 0.71 | 0.295719 |
Target: 5'- gGGCAUCGga-GCGCUacgucccgacgGaCGCCGACGUg -3' miRNA: 3'- -UCGUAGUaagCGCGA-----------CgGCGGCUGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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