miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8186 5' -56.9 NC_001978.2 + 491 0.67 0.494635
Target:  5'- aAGCAUCGggUGCGCgaccgGCUGaCCGuuGUa -3'
miRNA:   3'- -UCGUAGUaaGCGCGa----CGGC-GGCugCG- -5'
8186 5' -56.9 NC_001978.2 + 531 0.68 0.442793
Target:  5'- gGGCAUCGUUgcCGCugaagcccggaagGUUGCCGCCGGu-- -3'
miRNA:   3'- -UCGUAGUAA--GCG-------------CGACGGCGGCUgcg -5'
8186 5' -56.9 NC_001978.2 + 1501 0.72 0.228169
Target:  5'- cGCGUCAaugagaagUUCGCGCUGCCacggaaggaGCCGGaacgGCu -3'
miRNA:   3'- uCGUAGU--------AAGCGCGACGG---------CGGCUg---CG- -5'
8186 5' -56.9 NC_001978.2 + 1602 0.66 0.555605
Target:  5'- cAGCGacagaUCAU---CGCUGCCGCCaacgaccgcaaucaGGCGCg -3'
miRNA:   3'- -UCGU-----AGUAagcGCGACGGCGG--------------CUGCG- -5'
8186 5' -56.9 NC_001978.2 + 1837 0.66 0.537149
Target:  5'- cGGCAggGUUCaaGCccuGUUGCCGuCCGGCGUc -3'
miRNA:   3'- -UCGUagUAAG--CG---CGACGGC-GGCUGCG- -5'
8186 5' -56.9 NC_001978.2 + 2184 0.67 0.453721
Target:  5'- cGCAUgGUcuuugggauUCGC-UUGCUGCCGACGa -3'
miRNA:   3'- uCGUAgUA---------AGCGcGACGGCGGCUGCg -5'
8186 5' -56.9 NC_001978.2 + 3010 0.68 0.413766
Target:  5'- uGgGUCGUacgguucccaggcUCGCGCcucaaUGCCGUCGAgCGCu -3'
miRNA:   3'- uCgUAGUA-------------AGCGCG-----ACGGCGGCU-GCG- -5'
8186 5' -56.9 NC_001978.2 + 3050 0.66 0.523179
Target:  5'- cGCGUCGguccggcuucugUCGgagacgauugccaCGCUGCCGCUGA-GCa -3'
miRNA:   3'- uCGUAGUa-----------AGC-------------GCGACGGCGGCUgCG- -5'
8186 5' -56.9 NC_001978.2 + 4374 0.67 0.494635
Target:  5'- cGCAUCGUUCcugGgGCaggGgCGCCGuCGCu -3'
miRNA:   3'- uCGUAGUAAG---CgCGa--CgGCGGCuGCG- -5'
8186 5' -56.9 NC_001978.2 + 4764 0.69 0.377837
Target:  5'- cGUAUCggugaGUUCGCGCcGCCGaCUGAagaGCg -3'
miRNA:   3'- uCGUAG-----UAAGCGCGaCGGC-GGCUg--CG- -5'
8186 5' -56.9 NC_001978.2 + 5705 0.71 0.297968
Target:  5'- cGGCGUCAgccucaccgaaggcaGCGUUGgCGCCGGuCGCg -3'
miRNA:   3'- -UCGUAGUaag------------CGCGACgGCGGCU-GCG- -5'
8186 5' -56.9 NC_001978.2 + 6793 0.68 0.414715
Target:  5'- aGGCcgC--UUGCGCUGCCGUgaACGCc -3'
miRNA:   3'- -UCGuaGuaAGCGCGACGGCGgcUGCG- -5'
8186 5' -56.9 NC_001978.2 + 7658 0.66 0.526391
Target:  5'- cGguUCGUaaCGCGCUGCCGacguaCGAagGCa -3'
miRNA:   3'- uCguAGUAa-GCGCGACGGCg----GCUg-CG- -5'
8186 5' -56.9 NC_001978.2 + 8410 0.69 0.368969
Target:  5'- cGGCAauacgcCGUUCGUaaGUUGCCGCCacGACGUc -3'
miRNA:   3'- -UCGUa-----GUAAGCG--CGACGGCGG--CUGCG- -5'
8186 5' -56.9 NC_001978.2 + 8528 0.7 0.303269
Target:  5'- aGGCcg-GUUCGCGCcgUGCC-CCGAUGCu -3'
miRNA:   3'- -UCGuagUAAGCGCG--ACGGcGGCUGCG- -5'
8186 5' -56.9 NC_001978.2 + 9558 0.66 0.537149
Target:  5'- -uUAUCGUUCGCGCgGgUGgCGACGa -3'
miRNA:   3'- ucGUAGUAAGCGCGaCgGCgGCUGCg -5'
8186 5' -56.9 NC_001978.2 + 9898 0.69 0.360244
Target:  5'- uGCAUCGuUUCGC-CUGCCgacuucGCCG-CGCc -3'
miRNA:   3'- uCGUAGU-AAGCGcGACGG------CGGCuGCG- -5'
8186 5' -56.9 NC_001978.2 + 10719 0.66 0.558881
Target:  5'- uGCGUCG-UCGCuuGCUuCCGCUGugGg -3'
miRNA:   3'- uCGUAGUaAGCG--CGAcGGCGGCugCg -5'
8186 5' -56.9 NC_001978.2 + 12756 0.67 0.463781
Target:  5'- uGGUGUaCGUggCGaCGCUGCCGaCCGGCa- -3'
miRNA:   3'- -UCGUA-GUAa-GC-GCGACGGC-GGCUGcg -5'
8186 5' -56.9 NC_001978.2 + 12850 0.67 0.473957
Target:  5'- uGGCGUCGgccguaUCGCGCuuaUGUCGUCGG-GCu -3'
miRNA:   3'- -UCGUAGUa-----AGCGCG---ACGGCGGCUgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.