miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8192 3' -61 NC_001978.2 + 22818 1.12 0.000152
Target:  5'- gCCACAACGCCGCCGUCCCCGCGCUGGg -3'
miRNA:   3'- -GGUGUUGCGGCGGCAGGGGCGCGACC- -5'
8192 3' -61 NC_001978.2 + 28060 0.8 0.041765
Target:  5'- uCC-CAAUGCCGCCGUCCUgGgGCUGa -3'
miRNA:   3'- -GGuGUUGCGGCGGCAGGGgCgCGACc -5'
8192 3' -61 NC_001978.2 + 30698 0.76 0.08414
Target:  5'- gCCGCAACGuCCGCCGgagucgUCUCGCcCUGGg -3'
miRNA:   3'- -GGUGUUGC-GGCGGCa-----GGGGCGcGACC- -5'
8192 3' -61 NC_001978.2 + 4866 0.74 0.113789
Target:  5'- -gGCAACGUCGCCGUCCggcugggaaUCGCGCUc- -3'
miRNA:   3'- ggUGUUGCGGCGGCAGG---------GGCGCGAcc -5'
8192 3' -61 NC_001978.2 + 14364 0.73 0.132763
Target:  5'- uCCuCAACGaUCGCucuuaccggcacgaCGUCCCgCGCGCUGGg -3'
miRNA:   3'- -GGuGUUGC-GGCG--------------GCAGGG-GCGCGACC- -5'
8192 3' -61 NC_001978.2 + 5144 0.73 0.133838
Target:  5'- aCCACGACGacgaCGCCGuUCUUCGUGCgGGc -3'
miRNA:   3'- -GGUGUUGCg---GCGGC-AGGGGCGCGaCC- -5'
8192 3' -61 NC_001978.2 + 27880 0.71 0.178737
Target:  5'- uCCACAACGCC-CCGUUcgacuggCuuGUGUUGGa -3'
miRNA:   3'- -GGUGUUGCGGcGGCAG-------GggCGCGACC- -5'
8192 3' -61 NC_001978.2 + 13126 0.71 0.179205
Target:  5'- gCCGCucGACGCUGCCGaCCCCGacacgcuucaGcCUGGg -3'
miRNA:   3'- -GGUG--UUGCGGCGGCaGGGGCg---------C-GACC- -5'
8192 3' -61 NC_001978.2 + 17515 0.71 0.183946
Target:  5'- gCGCAgauacACGCCGUCGcCCUCaGCGCUGc -3'
miRNA:   3'- gGUGU-----UGCGGCGGCaGGGG-CGCGACc -5'
8192 3' -61 NC_001978.2 + 35591 0.7 0.198839
Target:  5'- uCgGCAGCGgguaUGCCGUCUCCggcGCGUUGGg -3'
miRNA:   3'- -GgUGUUGCg---GCGGCAGGGG---CGCGACC- -5'
8192 3' -61 NC_001978.2 + 28768 0.7 0.214224
Target:  5'- gCCGCGAaGUCGCCGUugauggacaugcgCCCCGUGCg-- -3'
miRNA:   3'- -GGUGUUgCGGCGGCA-------------GGGGCGCGacc -5'
8192 3' -61 NC_001978.2 + 27171 0.69 0.243752
Target:  5'- gCCACAAUGcCCGCCGaCUCCGCccgaaGCUuccGGu -3'
miRNA:   3'- -GGUGUUGC-GGCGGCaGGGGCG-----CGA---CC- -5'
8192 3' -61 NC_001978.2 + 13433 0.69 0.269217
Target:  5'- uCCGugcCAAUGCCGCCGUCUUCGuUGCa-- -3'
miRNA:   3'- -GGU---GUUGCGGCGGCAGGGGC-GCGacc -5'
8192 3' -61 NC_001978.2 + 21613 0.68 0.282735
Target:  5'- gUCACAGCGCCGCacagCGgaugaCCUGgGCUGa -3'
miRNA:   3'- -GGUGUUGCGGCG----GCag---GGGCgCGACc -5'
8192 3' -61 NC_001978.2 + 5661 0.68 0.296784
Target:  5'- gUCAgGAUGCCGCgCGgcugaCCCGUGCcGGu -3'
miRNA:   3'- -GGUgUUGCGGCG-GCag---GGGCGCGaCC- -5'
8192 3' -61 NC_001978.2 + 11031 0.68 0.30401
Target:  5'- aCCGucACGCCGCCGgaaCCCGacaaCGCaUGGu -3'
miRNA:   3'- -GGUguUGCGGCGGCag-GGGC----GCG-ACC- -5'
8192 3' -61 NC_001978.2 + 17643 0.68 0.30401
Target:  5'- gUCGcCAACGUCGCCGgucgCCuuGUGCUu- -3'
miRNA:   3'- -GGU-GUUGCGGCGGCa---GGggCGCGAcc -5'
8192 3' -61 NC_001978.2 + 22438 0.68 0.31137
Target:  5'- uCgACGGCGCUGCCGUUCUgcaCGUGaCUGa -3'
miRNA:   3'- -GgUGUUGCGGCGGCAGGG---GCGC-GACc -5'
8192 3' -61 NC_001978.2 + 26001 0.68 0.314352
Target:  5'- gCACGACGCCGucaagucggcucgacCCGUCCgcgaCCGUGCccaGGu -3'
miRNA:   3'- gGUGUUGCGGC---------------GGCAGG----GGCGCGa--CC- -5'
8192 3' -61 NC_001978.2 + 12491 0.67 0.318865
Target:  5'- gCgGCAGUGCUGCCGUCUCCGUcgGCg-- -3'
miRNA:   3'- -GgUGUUGCGGCGGCAGGGGCG--CGacc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.