Results 1 - 20 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8192 | 3' | -61 | NC_001978.2 | + | 22818 | 1.12 | 0.000152 |
Target: 5'- gCCACAACGCCGCCGUCCCCGCGCUGGg -3' miRNA: 3'- -GGUGUUGCGGCGGCAGGGGCGCGACC- -5' |
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8192 | 3' | -61 | NC_001978.2 | + | 6795 | 0.66 | 0.410081 |
Target: 5'- gCCGCuuGCGCUGCCGUgaacgccgaCCuuGUGUcGGu -3' miRNA: 3'- -GGUGu-UGCGGCGGCA---------GGggCGCGaCC- -5' |
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8192 | 3' | -61 | NC_001978.2 | + | 2704 | 0.66 | 0.410081 |
Target: 5'- -aAUggUGCuCGCCGUUCaCgGCGCUGu -3' miRNA: 3'- ggUGuuGCG-GCGGCAGG-GgCGCGACc -5' |
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8192 | 3' | -61 | NC_001978.2 | + | 33045 | 0.66 | 0.407386 |
Target: 5'- cCCGCGAaGCCGcCCGUgcgcuacugcccaaCgCCGCGCcGGu -3' miRNA: 3'- -GGUGUUgCGGC-GGCA--------------GgGGCGCGaCC- -5' |
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8192 | 3' | -61 | NC_001978.2 | + | 38166 | 0.66 | 0.383639 |
Target: 5'- -gGCGugGCGCgGCU-UCCCCGUGCcGGa -3' miRNA: 3'- ggUGU--UGCGgCGGcAGGGGCGCGaCC- -5' |
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8192 | 3' | -61 | NC_001978.2 | + | 10627 | 0.66 | 0.383639 |
Target: 5'- uCgGCAGCGUCGUCGUUgCUcaGCGCcGGu -3' miRNA: 3'- -GgUGUUGCGGCGGCAGgGG--CGCGaCC- -5' |
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8192 | 3' | -61 | NC_001978.2 | + | 14558 | 0.66 | 0.366651 |
Target: 5'- gCGCGagaACGUCGCUGcCCCUGaCGgUGGc -3' miRNA: 3'- gGUGU---UGCGGCGGCaGGGGC-GCgACC- -5' |
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8192 | 3' | -61 | NC_001978.2 | + | 35492 | 0.67 | 0.358354 |
Target: 5'- gCCugGgaGCGCuCGCCuucacGUCCCCcaacGCGCcGGa -3' miRNA: 3'- -GGugU--UGCG-GCGG-----CAGGGG----CGCGaCC- -5' |
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8192 | 3' | -61 | NC_001978.2 | + | 25508 | 0.67 | 0.358354 |
Target: 5'- gUguCGACGUcguuCGCCcgGUUCCCGCGCaUGGu -3' miRNA: 3'- -GguGUUGCG----GCGG--CAGGGGCGCG-ACC- -5' |
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8192 | 3' | -61 | NC_001978.2 | + | 11037 | 0.67 | 0.350188 |
Target: 5'- gCCugGGCGCUGCggaCGUCUCCgGCGUgauccGGu -3' miRNA: 3'- -GGugUUGCGGCG---GCAGGGG-CGCGa----CC- -5' |
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8192 | 3' | -61 | NC_001978.2 | + | 12491 | 0.67 | 0.318865 |
Target: 5'- gCgGCAGUGCUGCCGUCUCCGUcgGCg-- -3' miRNA: 3'- -GgUGUUGCGGCGGCAGGGGCG--CGacc -5' |
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8192 | 3' | -61 | NC_001978.2 | + | 14364 | 0.73 | 0.132763 |
Target: 5'- uCCuCAACGaUCGCucuuaccggcacgaCGUCCCgCGCGCUGGg -3' miRNA: 3'- -GGuGUUGC-GGCG--------------GCAGGG-GCGCGACC- -5' |
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8192 | 3' | -61 | NC_001978.2 | + | 5144 | 0.73 | 0.133838 |
Target: 5'- aCCACGACGacgaCGCCGuUCUUCGUGCgGGc -3' miRNA: 3'- -GGUGUUGCg---GCGGC-AGGGGCGCGaCC- -5' |
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8192 | 3' | -61 | NC_001978.2 | + | 27880 | 0.71 | 0.178737 |
Target: 5'- uCCACAACGCC-CCGUUcgacuggCuuGUGUUGGa -3' miRNA: 3'- -GGUGUUGCGGcGGCAG-------GggCGCGACC- -5' |
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8192 | 3' | -61 | NC_001978.2 | + | 13126 | 0.71 | 0.179205 |
Target: 5'- gCCGCucGACGCUGCCGaCCCCGacacgcuucaGcCUGGg -3' miRNA: 3'- -GGUG--UUGCGGCGGCaGGGGCg---------C-GACC- -5' |
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8192 | 3' | -61 | NC_001978.2 | + | 21613 | 0.68 | 0.282735 |
Target: 5'- gUCACAGCGCCGCacagCGgaugaCCUGgGCUGa -3' miRNA: 3'- -GGUGUUGCGGCG----GCag---GGGCgCGACc -5' |
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8192 | 3' | -61 | NC_001978.2 | + | 22438 | 0.68 | 0.31137 |
Target: 5'- uCgACGGCGCUGCCGUUCUgcaCGUGaCUGa -3' miRNA: 3'- -GgUGUUGCGGCGGCAGGG---GCGC-GACc -5' |
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8192 | 3' | -61 | NC_001978.2 | + | 26001 | 0.68 | 0.314352 |
Target: 5'- gCACGACGCCGucaagucggcucgacCCGUCCgcgaCCGUGCccaGGu -3' miRNA: 3'- gGUGUUGCGGC---------------GGCAGG----GGCGCGa--CC- -5' |
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8192 | 3' | -61 | NC_001978.2 | + | 28060 | 0.8 | 0.041765 |
Target: 5'- uCC-CAAUGCCGCCGUCCUgGgGCUGa -3' miRNA: 3'- -GGuGUUGCGGCGGCAGGGgCgCGACc -5' |
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8192 | 3' | -61 | NC_001978.2 | + | 6304 | 0.66 | 0.410081 |
Target: 5'- aCCGCAguACGCCucuaCCGUCUCaaCGCUGa -3' miRNA: 3'- -GGUGU--UGCGGc---GGCAGGGgcGCGACc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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