miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8192 3' -61 NC_001978.2 + 1098 0.67 0.350188
Target:  5'- uCgACAugGCCguuGCCGaCgCCGCuuGCUGGg -3'
miRNA:   3'- -GgUGUugCGG---CGGCaGgGGCG--CGACC- -5'
8192 3' -61 NC_001978.2 + 2704 0.66 0.410081
Target:  5'- -aAUggUGCuCGCCGUUCaCgGCGCUGu -3'
miRNA:   3'- ggUGuuGCG-GCGGCAGG-GgCGCGACc -5'
8192 3' -61 NC_001978.2 + 2996 0.67 0.334258
Target:  5'- cCCAgGcucGCGCCucaauGCCGUCga-GCGCUGGg -3'
miRNA:   3'- -GGUgU---UGCGG-----CGGCAGgggCGCGACC- -5'
8192 3' -61 NC_001978.2 + 4866 0.74 0.113789
Target:  5'- -gGCAACGUCGCCGUCCggcugggaaUCGCGCUc- -3'
miRNA:   3'- ggUGUUGCGGCGGCAGG---------GGCGCGAcc -5'
8192 3' -61 NC_001978.2 + 5131 0.66 0.413692
Target:  5'- gUCACAGCGuCCGUCG-CCuuaauggcgucgauaCCGCGCUu- -3'
miRNA:   3'- -GGUGUUGC-GGCGGCaGG---------------GGCGCGAcc -5'
8192 3' -61 NC_001978.2 + 5144 0.73 0.133838
Target:  5'- aCCACGACGacgaCGCCGuUCUUCGUGCgGGc -3'
miRNA:   3'- -GGUGUUGCg---GCGGC-AGGGGCGCGaCC- -5'
8192 3' -61 NC_001978.2 + 5661 0.68 0.296784
Target:  5'- gUCAgGAUGCCGCgCGgcugaCCCGUGCcGGu -3'
miRNA:   3'- -GGUgUUGCGGCG-GCag---GGGCGCGaCC- -5'
8192 3' -61 NC_001978.2 + 6304 0.66 0.410081
Target:  5'- aCCGCAguACGCCucuaCCGUCUCaaCGCUGa -3'
miRNA:   3'- -GGUGU--UGCGGc---GGCAGGGgcGCGACc -5'
8192 3' -61 NC_001978.2 + 6795 0.66 0.410081
Target:  5'- gCCGCuuGCGCUGCCGUgaacgccgaCCuuGUGUcGGu -3'
miRNA:   3'- -GGUGu-UGCGGCGGCA---------GGggCGCGaCC- -5'
8192 3' -61 NC_001978.2 + 9628 0.66 0.366651
Target:  5'- uUCACuuCGUCGCCa--CCCGCGCg-- -3'
miRNA:   3'- -GGUGuuGCGGCGGcagGGGCGCGacc -5'
8192 3' -61 NC_001978.2 + 10627 0.66 0.383639
Target:  5'- uCgGCAGCGUCGUCGUUgCUcaGCGCcGGu -3'
miRNA:   3'- -GgUGUUGCGGCGGCAGgGG--CGCGaCC- -5'
8192 3' -61 NC_001978.2 + 11031 0.68 0.30401
Target:  5'- aCCGucACGCCGCCGgaaCCCGacaaCGCaUGGu -3'
miRNA:   3'- -GGUguUGCGGCGGCag-GGGC----GCG-ACC- -5'
8192 3' -61 NC_001978.2 + 11037 0.67 0.350188
Target:  5'- gCCugGGCGCUGCggaCGUCUCCgGCGUgauccGGu -3'
miRNA:   3'- -GGugUUGCGGCG---GCAGGGG-CGCGa----CC- -5'
8192 3' -61 NC_001978.2 + 11745 0.66 0.378488
Target:  5'- gCCGCAACGCUGCCGUacugagugaagCggcuuaccgggucguCCgGCGCcGGu -3'
miRNA:   3'- -GGUGUUGCGGCGGCA-----------G---------------GGgCGCGaCC- -5'
8192 3' -61 NC_001978.2 + 12491 0.67 0.318865
Target:  5'- gCgGCAGUGCUGCCGUCUCCGUcgGCg-- -3'
miRNA:   3'- -GgUGUUGCGGCGGCAGGGGCG--CGacc -5'
8192 3' -61 NC_001978.2 + 13126 0.71 0.179205
Target:  5'- gCCGCucGACGCUGCCGaCCCCGacacgcuucaGcCUGGg -3'
miRNA:   3'- -GGUG--UUGCGGCGGCaGGGGCg---------C-GACC- -5'
8192 3' -61 NC_001978.2 + 13433 0.69 0.269217
Target:  5'- uCCGugcCAAUGCCGCCGUCUUCGuUGCa-- -3'
miRNA:   3'- -GGU---GUUGCGGCGGCAGGGGC-GCGacc -5'
8192 3' -61 NC_001978.2 + 14364 0.73 0.132763
Target:  5'- uCCuCAACGaUCGCucuuaccggcacgaCGUCCCgCGCGCUGGg -3'
miRNA:   3'- -GGuGUUGC-GGCG--------------GCAGGG-GCGCGACC- -5'
8192 3' -61 NC_001978.2 + 14558 0.66 0.366651
Target:  5'- gCGCGagaACGUCGCUGcCCCUGaCGgUGGc -3'
miRNA:   3'- gGUGU---UGCGGCGGCaGGGGC-GCgACC- -5'
8192 3' -61 NC_001978.2 + 17515 0.71 0.183946
Target:  5'- gCGCAgauacACGCCGUCGcCCUCaGCGCUGc -3'
miRNA:   3'- gGUGU-----UGCGGCGGCaGGGG-CGCGACc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.