miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8199 3' -53.2 NC_001978.2 + 40360 0.67 0.742517
Target:  5'- aUGgGCCGACCGGgggacCGGcCGACCc -3'
miRNA:   3'- cAUgCGGCUGGCCaagc-GCUuGUUGG- -5'
8199 3' -53.2 NC_001978.2 + 39360 0.68 0.687896
Target:  5'- -cGCuCCGGCCGGUcgagcuugaUUGCGGAcCGAUCa -3'
miRNA:   3'- caUGcGGCUGGCCA---------AGCGCUU-GUUGG- -5'
8199 3' -53.2 NC_001978.2 + 38902 0.67 0.742517
Target:  5'- gGUACGUCGGCgGGaaggCGCuuACGGCUu -3'
miRNA:   3'- -CAUGCGGCUGgCCaa--GCGcuUGUUGG- -5'
8199 3' -53.2 NC_001978.2 + 38135 0.71 0.510246
Target:  5'- aUACGCCG-CCGac-CGCGAAC-GCCa -3'
miRNA:   3'- cAUGCGGCuGGCcaaGCGCUUGuUGG- -5'
8199 3' -53.2 NC_001978.2 + 36957 0.75 0.282752
Target:  5'- --gUGCCGACCGGca-GCGGcaGCGACCu -3'
miRNA:   3'- cauGCGGCUGGCCaagCGCU--UGUUGG- -5'
8199 3' -53.2 NC_001978.2 + 36672 0.68 0.643118
Target:  5'- -aGCGCCccugaGCCGG-UCGCGGAaccugAGCCg -3'
miRNA:   3'- caUGCGGc----UGGCCaAGCGCUUg----UUGG- -5'
8199 3' -53.2 NC_001978.2 + 36091 0.68 0.673405
Target:  5'- --cCGCCGACaccugGGcgCGCGAggaagccgaagccgACGACCa -3'
miRNA:   3'- cauGCGGCUGg----CCaaGCGCU--------------UGUUGG- -5'
8199 3' -53.2 NC_001978.2 + 36004 0.67 0.709997
Target:  5'- --cCGCCGAcCCGGgcgUUGUGuGCGACa -3'
miRNA:   3'- cauGCGGCU-GGCCa--AGCGCuUGUUGg -5'
8199 3' -53.2 NC_001978.2 + 35725 0.68 0.654356
Target:  5'- --gUGCCGACCGGUcuUCGgGGuCGAgCu -3'
miRNA:   3'- cauGCGGCUGGCCA--AGCgCUuGUUgG- -5'
8199 3' -53.2 NC_001978.2 + 35239 0.66 0.773989
Target:  5'- --cCGUCGuACCGGggCGCuGACGGCg -3'
miRNA:   3'- cauGCGGC-UGGCCaaGCGcUUGUUGg -5'
8199 3' -53.2 NC_001978.2 + 34670 0.69 0.598165
Target:  5'- -cAC-CCGGCaCGGUUCG-GAguGCGACCg -3'
miRNA:   3'- caUGcGGCUG-GCCAAGCgCU--UGUUGG- -5'
8199 3' -53.2 NC_001978.2 + 34142 0.68 0.687896
Target:  5'- uGUGCGUCcGCCGGagcgugcccaCGUGGGCAACUg -3'
miRNA:   3'- -CAUGCGGcUGGCCaa--------GCGCUUGUUGG- -5'
8199 3' -53.2 NC_001978.2 + 33869 0.66 0.763635
Target:  5'- -cACGUCGACaaacucaGGUUCGacguCGAGCGcCCa -3'
miRNA:   3'- caUGCGGCUGg------CCAAGC----GCUUGUuGG- -5'
8199 3' -53.2 NC_001978.2 + 33866 0.68 0.676757
Target:  5'- --gUGCCGACCGug-CGCGuguacgccgacGACGACCc -3'
miRNA:   3'- cauGCGGCUGGCcaaGCGC-----------UUGUUGG- -5'
8199 3' -53.2 NC_001978.2 + 33392 0.67 0.746781
Target:  5'- -aGCGUCGAgcugaaggaacggguUCGGUUCGCGcugcccACAAUCg -3'
miRNA:   3'- caUGCGGCU---------------GGCCAAGCGCu-----UGUUGG- -5'
8199 3' -53.2 NC_001978.2 + 33284 0.75 0.305293
Target:  5'- -aGCGCgCGACCGGUcacaagcucgaUUGUGGGCAGCg -3'
miRNA:   3'- caUGCG-GCUGGCCA-----------AGCGCUUGUUGg -5'
8199 3' -53.2 NC_001978.2 + 33107 0.69 0.586978
Target:  5'- -aGCGCaCGGgCGGcUUCGCGGGCuugcuuccGGCCg -3'
miRNA:   3'- caUGCG-GCUgGCC-AAGCGCUUG--------UUGG- -5'
8199 3' -53.2 NC_001978.2 + 32322 0.67 0.7067
Target:  5'- -gGCGUCGugacCCGGUcgacguugagcgcuUCGCGAAUGGCg -3'
miRNA:   3'- caUGCGGCu---GGCCA--------------AGCGCUUGUUGg -5'
8199 3' -53.2 NC_001978.2 + 32259 0.68 0.631869
Target:  5'- -aACGUCGACCGGgUCacgacgcccaGCGGACGgacguucacgcGCCg -3'
miRNA:   3'- caUGCGGCUGGCCaAG----------CGCUUGU-----------UGG- -5'
8199 3' -53.2 NC_001978.2 + 32162 0.69 0.575831
Target:  5'- ---aGCCGACCGGg--GCGGACGGgUa -3'
miRNA:   3'- caugCGGCUGGCCaagCGCUUGUUgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.