miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8202 3' -57.6 NC_001978.2 + 31272 0.66 0.577129
Target:  5'- uCgAGUUCGUC-ACGGCCaacGCCGACg -3'
miRNA:   3'- -GgUCAGGCGGcUGCUGGaa-CGGCUGg -5'
8202 3' -57.6 NC_001978.2 + 33173 0.66 0.566419
Target:  5'- -gAGUUCGCCGGuCGGg--UGCuCGACCa -3'
miRNA:   3'- ggUCAGGCGGCU-GCUggaACG-GCUGG- -5'
8202 3' -57.6 NC_001978.2 + 36770 0.66 0.566419
Target:  5'- uCCGGa--GCCGACGccggaGCCUgagccggagccUGCCGACg -3'
miRNA:   3'- -GGUCaggCGGCUGC-----UGGA-----------ACGGCUGg -5'
8202 3' -57.6 NC_001978.2 + 17516 0.66 0.566419
Target:  5'- cCCAGacgUUGCgGGCGGCUccgucuccGCCGACCc -3'
miRNA:   3'- -GGUCa--GGCGgCUGCUGGaa------CGGCUGG- -5'
8202 3' -57.6 NC_001978.2 + 7163 0.66 0.566419
Target:  5'- aCCGGcCCggaaGCCGACaGACUcaaucgGCuCGACCg -3'
miRNA:   3'- -GGUCaGG----CGGCUG-CUGGaa----CG-GCUGG- -5'
8202 3' -57.6 NC_001978.2 + 29840 0.66 0.566419
Target:  5'- uCCGGg-UGCCGACu-CC-UGCCGACg -3'
miRNA:   3'- -GGUCagGCGGCUGcuGGaACGGCUGg -5'
8202 3' -57.6 NC_001978.2 + 6642 0.66 0.545164
Target:  5'- aCGGUaga-CGACGACCUUGCCc-CCg -3'
miRNA:   3'- gGUCAggcgGCUGCUGGAACGGcuGG- -5'
8202 3' -57.6 NC_001978.2 + 23558 0.66 0.545164
Target:  5'- uUCAcGcUCGCCGACGACCcggaGCUuGGCCg -3'
miRNA:   3'- -GGU-CaGGCGGCUGCUGGaa--CGG-CUGG- -5'
8202 3' -57.6 NC_001978.2 + 15815 0.66 0.545164
Target:  5'- cCCcGUCgGCCGACGugCccgUUGgUGACa -3'
miRNA:   3'- -GGuCAGgCGGCUGCugG---AACgGCUGg -5'
8202 3' -57.6 NC_001978.2 + 17494 0.66 0.545164
Target:  5'- cUCAGcgCUGCCGuucguguuCGugUUgccGCCGACCg -3'
miRNA:   3'- -GGUCa-GGCGGCu-------GCugGAa--CGGCUGG- -5'
8202 3' -57.6 NC_001978.2 + 39907 0.66 0.545164
Target:  5'- aCgGGUCCGUCGuACGcGCCU-GCCGcGCg -3'
miRNA:   3'- -GgUCAGGCGGC-UGC-UGGAaCGGC-UGg -5'
8202 3' -57.6 NC_001978.2 + 4553 0.66 0.534631
Target:  5'- aCCA-UCCGCCuucACGGUCUUcGCCGACUc -3'
miRNA:   3'- -GGUcAGGCGGc--UGCUGGAA-CGGCUGG- -5'
8202 3' -57.6 NC_001978.2 + 17586 0.66 0.534631
Target:  5'- aCCGGcgaCGuuGGCGACgUUGgCGGCUc -3'
miRNA:   3'- -GGUCag-GCggCUGCUGgAACgGCUGG- -5'
8202 3' -57.6 NC_001978.2 + 17841 0.67 0.524171
Target:  5'- uCCGGcaaggaCGCUGACGGCg-UGCCGGgCg -3'
miRNA:   3'- -GGUCag----GCGGCUGCUGgaACGGCUgG- -5'
8202 3' -57.6 NC_001978.2 + 10696 0.67 0.513791
Target:  5'- aCCGGcgCUGagcaaCGACGACgcUGCCGACa -3'
miRNA:   3'- -GGUCa-GGCg----GCUGCUGgaACGGCUGg -5'
8202 3' -57.6 NC_001978.2 + 11293 0.67 0.513791
Target:  5'- aCGGUCaCGCUGACG-CUUgagguauacggGCgCGACCg -3'
miRNA:   3'- gGUCAG-GCGGCUGCuGGAa----------CG-GCUGG- -5'
8202 3' -57.6 NC_001978.2 + 29388 0.67 0.513791
Target:  5'- gCCcGUCguCGCCGACgcuGACCUaggggGCCGGuCCu -3'
miRNA:   3'- -GGuCAG--GCGGCUG---CUGGAa----CGGCU-GG- -5'
8202 3' -57.6 NC_001978.2 + 21400 0.67 0.513791
Target:  5'- cUCuGUUCGCCGACGGCaagacgcacGCCGuACUg -3'
miRNA:   3'- -GGuCAGGCGGCUGCUGgaa------CGGC-UGG- -5'
8202 3' -57.6 NC_001978.2 + 5491 0.67 0.513791
Target:  5'- -gAGUUCGCCacuGAucagguucuUGACCUUGUCGGCUu -3'
miRNA:   3'- ggUCAGGCGG---CU---------GCUGGAACGGCUGG- -5'
8202 3' -57.6 NC_001978.2 + 30061 0.67 0.513791
Target:  5'- -uGGcUCCGCaugguGGCGcacGCUUUGCCGACUg -3'
miRNA:   3'- ggUC-AGGCGg----CUGC---UGGAACGGCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.