miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8203 5' -54.7 NC_001978.2 + 40103 0.68 0.562671
Target:  5'- cGACUacgggcagggGGCAGGGAacgcccaucgagaaGCGCGCuucgaucacgugggCGAAGCCg -3'
miRNA:   3'- -CUGAg---------UCGUUCCU--------------UGCGCG--------------GCUUCGG- -5'
8203 5' -54.7 NC_001978.2 + 39903 0.66 0.633607
Target:  5'- uGACgcuccggCAGCAAGGGcggaagagcgGCuugccgaacuugaaGcCGCCGAAGCCc -3'
miRNA:   3'- -CUGa------GUCGUUCCU----------UG--------------C-GCGGCUUCGG- -5'
8203 5' -54.7 NC_001978.2 + 39769 0.72 0.307181
Target:  5'- cGGCgaacgGGCGAaccuuguugcGGAGCGCGCCGAcGCCc -3'
miRNA:   3'- -CUGag---UCGUU----------CCUUGCGCGGCUuCGG- -5'
8203 5' -54.7 NC_001978.2 + 39435 0.7 0.441395
Target:  5'- ---aCGGCAGGGGGCGCGgCaaGggGCUu -3'
miRNA:   3'- cugaGUCGUUCCUUGCGCgG--CuuCGG- -5'
8203 5' -54.7 NC_001978.2 + 38898 0.69 0.461671
Target:  5'- cGACuUCAGCGAaGAuucuuugugcgACGCGUCG-AGCCg -3'
miRNA:   3'- -CUG-AGUCGUUcCU-----------UGCGCGGCuUCGG- -5'
8203 5' -54.7 NC_001978.2 + 38513 0.68 0.525214
Target:  5'- cGACcuUCAGCGcgaAGucGAGCGCGaCgGggGCCg -3'
miRNA:   3'- -CUG--AGUCGU---UC--CUUGCGC-GgCuuCGG- -5'
8203 5' -54.7 NC_001978.2 + 38236 0.66 0.659623
Target:  5'- uGCUcCGGCAcgGGGAAgcCGCGCCac-GCCu -3'
miRNA:   3'- cUGA-GUCGU--UCCUU--GCGCGGcuuCGG- -5'
8203 5' -54.7 NC_001978.2 + 36664 0.72 0.322325
Target:  5'- cGACuUCGGCGAGaAGCaucacaaGCGCCGGAGCg -3'
miRNA:   3'- -CUG-AGUCGUUCcUUG-------CGCGGCUUCGg -5'
8203 5' -54.7 NC_001978.2 + 36103 0.68 0.525214
Target:  5'- gGGCgc-GCGAGGAa---GCCGAAGCCg -3'
miRNA:   3'- -CUGaguCGUUCCUugcgCGGCUUCGG- -5'
8203 5' -54.7 NC_001978.2 + 36008 0.66 0.658494
Target:  5'- cGACcCGGgcguugugugcgaCAAGGAACuaGCgGAAGCCc -3'
miRNA:   3'- -CUGaGUC-------------GUUCCUUGcgCGgCUUCGG- -5'
8203 5' -54.7 NC_001978.2 + 35909 0.66 0.648321
Target:  5'- cGACgUCgGGCAAGGGAaggucgGCGCCcAGGUCg -3'
miRNA:   3'- -CUG-AG-UCGUUCCUUg-----CGCGGcUUCGG- -5'
8203 5' -54.7 NC_001978.2 + 35554 0.66 0.670898
Target:  5'- cACUCAGCGccGGAUGUcgaGCCGGAGaCg -3'
miRNA:   3'- cUGAGUCGUucCUUGCG---CGGCUUCgG- -5'
8203 5' -54.7 NC_001978.2 + 35118 0.7 0.421634
Target:  5'- gGACggAGCAAGGAagccACGCGCgGGcAGCa -3'
miRNA:   3'- -CUGagUCGUUCCU----UGCGCGgCU-UCGg -5'
8203 5' -54.7 NC_001978.2 + 34261 0.71 0.356878
Target:  5'- --gUCGGC--GGAGCuuGCCGGAGCCa -3'
miRNA:   3'- cugAGUCGuuCCUUGcgCGGCUUCGG- -5'
8203 5' -54.7 NC_001978.2 + 32959 0.69 0.461671
Target:  5'- -gUUCAGgGAGGAuuaCGCCGAAGCg -3'
miRNA:   3'- cuGAGUCgUUCCUugcGCGGCUUCGg -5'
8203 5' -54.7 NC_001978.2 + 32275 0.7 0.402415
Target:  5'- cGACgccCAGCGGacGGAcguucACGCGCCGugccuacuGAGCCg -3'
miRNA:   3'- -CUGa--GUCGUU--CCU-----UGCGCGGC--------UUCGG- -5'
8203 5' -54.7 NC_001978.2 + 32187 0.72 0.315083
Target:  5'- ---gCGGCAAGcuGACGCGCCuGAGCCg -3'
miRNA:   3'- cugaGUCGUUCc-UUGCGCGGcUUCGG- -5'
8203 5' -54.7 NC_001978.2 + 32029 0.72 0.299431
Target:  5'- aGGCUgAGC-GGGGGCGCGUCGucGGCUu -3'
miRNA:   3'- -CUGAgUCGuUCCUUGCGCGGCu-UCGG- -5'
8203 5' -54.7 NC_001978.2 + 31450 0.7 0.402415
Target:  5'- cGCUgAGCuaccGGAGCcauGgGCCGAAGCCc -3'
miRNA:   3'- cUGAgUCGuu--CCUUG---CgCGGCUUCGG- -5'
8203 5' -54.7 NC_001978.2 + 31401 0.66 0.641532
Target:  5'- aGCUCAGCgGAagagcgccgcaacccGGGACGCgaaagcgugcacGCgGAAGCCg -3'
miRNA:   3'- cUGAGUCG-UU---------------CCUUGCG------------CGgCUUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.