miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8203 5' -54.7 NC_001978.2 + 21571 0.66 0.670898
Target:  5'- -cCUCAGCGcacGGGGugcACGuCGgCGGAGUCg -3'
miRNA:   3'- cuGAGUCGU---UCCU---UGC-GCgGCUUCGG- -5'
8203 5' -54.7 NC_001978.2 + 30511 0.7 0.401468
Target:  5'- cGugUCGGCAAgGGAAC-CGUCGGcguccgcguucucAGCCg -3'
miRNA:   3'- -CugAGUCGUU-CCUUGcGCGGCU-------------UCGG- -5'
8203 5' -54.7 NC_001978.2 + 17827 0.71 0.36569
Target:  5'- aAUUCGGCcccGGAccguccuuguacGCGuCGCCGAAGCCc -3'
miRNA:   3'- cUGAGUCGuu-CCU------------UGC-GCGGCUUCGG- -5'
8203 5' -54.7 NC_001978.2 + 18896 0.73 0.265733
Target:  5'- cGCUCcgcagcgucgauAGCGGGGAACGCcgcgcgcacccaaaaGCCGggGUCg -3'
miRNA:   3'- cUGAG------------UCGUUCCUUGCG---------------CGGCuuCGG- -5'
8203 5' -54.7 NC_001978.2 + 22803 0.66 0.625681
Target:  5'- cGACggCAGCGAcGAacACGaCGCCGAcgaauGCCa -3'
miRNA:   3'- -CUGa-GUCGUUcCU--UGC-GCGGCUu----CGG- -5'
8203 5' -54.7 NC_001978.2 + 2559 0.66 0.625681
Target:  5'- aGAgUUAGUcGGGAACGCcucaaCCGGgaAGCCg -3'
miRNA:   3'- -CUgAGUCGuUCCUUGCGc----GGCU--UCGG- -5'
8203 5' -54.7 NC_001978.2 + 1378 0.67 0.614364
Target:  5'- cGCgUCAGC-GGGAAUGUGCCGcgcaaucacgGGGUCg -3'
miRNA:   3'- cUG-AGUCGuUCCUUGCGCGGC----------UUCGG- -5'
8203 5' -54.7 NC_001978.2 + 22698 0.67 0.56936
Target:  5'- gGAgUCGGCAacccgcuaccGGGcGCGuCGCUGAGuGCCg -3'
miRNA:   3'- -CUgAGUCGU----------UCCuUGC-GCGGCUU-CGG- -5'
8203 5' -54.7 NC_001978.2 + 20832 0.67 0.568244
Target:  5'- gGACUCuuuGCGGuccGGAccgucgaACGCGC-GGAGCCa -3'
miRNA:   3'- -CUGAGu--CGUU---CCU-------UGCGCGgCUUCGG- -5'
8203 5' -54.7 NC_001978.2 + 31450 0.7 0.402415
Target:  5'- cGCUgAGCuaccGGAGCcauGgGCCGAAGCCc -3'
miRNA:   3'- cUGAgUCGuu--CCUUG---CgCGGCUUCGG- -5'
8203 5' -54.7 NC_001978.2 + 27610 0.68 0.536141
Target:  5'- gGAgUCGGCAacccGGGGGaaUGCCGAAGCg -3'
miRNA:   3'- -CUgAGUCGU----UCCUUgcGCGGCUUCGg -5'
8203 5' -54.7 NC_001978.2 + 21316 0.67 0.56936
Target:  5'- cGCUCAGguCAAGGucgAACGCGUCGGcGGCa -3'
miRNA:   3'- cUGAGUC--GUUCC---UUGCGCGGCU-UCGg -5'
8203 5' -54.7 NC_001978.2 + 2623 0.66 0.669772
Target:  5'- uGGCUCAGuCGAccgucacGGcACGCGUCGuacacGGCCu -3'
miRNA:   3'- -CUGAGUC-GUU-------CCuUGCGCGGCu----UCGG- -5'
8203 5' -54.7 NC_001978.2 + 38898 0.69 0.461671
Target:  5'- cGACuUCAGCGAaGAuucuuugugcgACGCGUCG-AGCCg -3'
miRNA:   3'- -CUG-AGUCGUUcCU-----------UGCGCGGCuUCGG- -5'
8203 5' -54.7 NC_001978.2 + 38236 0.66 0.659623
Target:  5'- uGCUcCGGCAcgGGGAAgcCGCGCCac-GCCu -3'
miRNA:   3'- cUGA-GUCGU--UCCUU--GCGCGGcuuCGG- -5'
8203 5' -54.7 NC_001978.2 + 24813 0.67 0.56936
Target:  5'- uGACUCAGgGuguGGcgcuuguCGCGCgGAAGCUu -3'
miRNA:   3'- -CUGAGUCgUu--CCuu-----GCGCGgCUUCGG- -5'
8203 5' -54.7 NC_001978.2 + 35118 0.7 0.421634
Target:  5'- gGACggAGCAAGGAagccACGCGCgGGcAGCa -3'
miRNA:   3'- -CUGagUCGUUCCU----UGCGCGgCU-UCGg -5'
8203 5' -54.7 NC_001978.2 + 12078 0.71 0.383761
Target:  5'- --gUCGGCAAGcugaGACGCGCCauAGCCg -3'
miRNA:   3'- cugAGUCGUUCc---UUGCGCGGcuUCGG- -5'
8203 5' -54.7 NC_001978.2 + 35909 0.66 0.648321
Target:  5'- cGACgUCgGGCAAGGGAaggucgGCGCCcAGGUCg -3'
miRNA:   3'- -CUG-AG-UCGUUCCUUg-----CGCGGcUUCGG- -5'
8203 5' -54.7 NC_001978.2 + 17682 0.66 0.625681
Target:  5'- cGGCUCAGCGGGcuugucaGGCGUGgUCG-AGCCg -3'
miRNA:   3'- -CUGAGUCGUUCc------UUGCGC-GGCuUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.