Results 41 - 46 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8207 | 5' | -55.6 | NC_001978.2 | + | 30765 | 0.68 | 0.516519 |
Target: 5'- gGCaaggGCGUCGAgCACGuaCCGGCGCUc- -3' miRNA: 3'- gCGa---UGCAGCUgGUGC--GGCUGUGAcu -5' |
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8207 | 5' | -55.6 | NC_001978.2 | + | 9403 | 0.66 | 0.614536 |
Target: 5'- aCGCUuCGUCGgcguucuucGCCAUGCCGGuuUUGAg -3' miRNA: 3'- -GCGAuGCAGC---------UGGUGCGGCUguGACU- -5' |
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8207 | 5' | -55.6 | NC_001978.2 | + | 7622 | 0.66 | 0.647801 |
Target: 5'- aCGUcGCGucgaacUCGACCACGCUGcccGCACggGAa -3' miRNA: 3'- -GCGaUGC------AGCUGGUGCGGC---UGUGa-CU- -5' |
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8207 | 5' | -55.6 | NC_001978.2 | + | 15002 | 0.66 | 0.658874 |
Target: 5'- gCGCcaUACGUUGcCCGUGCCGguacgcacGCGCUGAu -3' miRNA: 3'- -GCG--AUGCAGCuGGUGCGGC--------UGUGACU- -5' |
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8207 | 5' | -55.6 | NC_001978.2 | + | 18892 | 0.66 | 0.669922 |
Target: 5'- cCGCaGCGUCGAUagcggggaACGCCGcGCGCa-- -3' miRNA: 3'- -GCGaUGCAGCUGg-------UGCGGC-UGUGacu -5' |
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8207 | 5' | -55.6 | NC_001978.2 | + | 6804 | 0.7 | 0.415833 |
Target: 5'- gCGCUcaGCGUCGACCggauugcccgGCGUCGugACa-- -3' miRNA: 3'- -GCGA--UGCAGCUGG----------UGCGGCugUGacu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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