Results 41 - 46 of 46 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 8207 | 5' | -55.6 | NC_001978.2 | + | 15558 | 0.66 | 0.658874 |
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Target: 5'- uGUUGCGgaaGGCUuCaCCGGCACUGAg -3' miRNA: 3'- gCGAUGCag-CUGGuGcGGCUGUGACU- -5' |
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| 8207 | 5' | -55.6 | NC_001978.2 | + | 30739 | 0.66 | 0.658874 |
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Target: 5'- cCGUgucgACGUCGACCGaaggggaaguUGCCGACGa--- -3' miRNA: 3'- -GCGa---UGCAGCUGGU----------GCGGCUGUgacu -5' |
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| 8207 | 5' | -55.6 | NC_001978.2 | + | 5126 | 0.66 | 0.658874 |
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Target: 5'- gCGCUcaGCGUuccgcCGACCACGacgaCGACGCc-- -3' miRNA: 3'- -GCGA--UGCA-----GCUGGUGCg---GCUGUGacu -5' |
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| 8207 | 5' | -55.6 | NC_001978.2 | + | 16719 | 0.66 | 0.668818 |
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Target: 5'- cCGCUgcccauuGCGUCGACCGUGCUucagccugGGCGCUa- -3' miRNA: 3'- -GCGA-------UGCAGCUGGUGCGG--------CUGUGAcu -5' |
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| 8207 | 5' | -55.6 | NC_001978.2 | + | 18892 | 0.66 | 0.669922 |
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Target: 5'- cCGCaGCGUCGAUagcggggaACGCCGcGCGCa-- -3' miRNA: 3'- -GCGaUGCAGCUGg-------UGCGGC-UGUGacu -5' |
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| 8207 | 5' | -55.6 | NC_001978.2 | + | 19292 | 0.66 | 0.669922 |
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Target: 5'- -aCUAC-UCGACCACGCcCGACgGCUu- -3' miRNA: 3'- gcGAUGcAGCUGGUGCG-GCUG-UGAcu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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