miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8211 3' -55.4 NC_001978.2 + 14556 0.66 0.65191
Target:  5'- aAGCGCGAgaACGUCGcugccccugacggugGCGCUcUUGGCa -3'
miRNA:   3'- -UUGCGCUa-UGCAGUa--------------CGCGGcAGCCG- -5'
8211 3' -55.4 NC_001978.2 + 5205 0.66 0.639579
Target:  5'- gAACgGCGu--CGUCGU-CGUgGUCGGCg -3'
miRNA:   3'- -UUG-CGCuauGCAGUAcGCGgCAGCCG- -5'
8211 3' -55.4 NC_001978.2 + 2160 0.66 0.639579
Target:  5'- uGCGCGGUGCGUCGacaUGguUGCCGcaUGGUc -3'
miRNA:   3'- uUGCGCUAUGCAGU---AC--GCGGCa-GCCG- -5'
8211 3' -55.4 NC_001978.2 + 32384 0.66 0.628362
Target:  5'- uGACGcCGucuUGCGUg--GCGCCuUCGGCu -3'
miRNA:   3'- -UUGC-GCu--AUGCAguaCGCGGcAGCCG- -5'
8211 3' -55.4 NC_001978.2 + 31367 0.66 0.628362
Target:  5'- gAAUGCugaacGGUGCugaUCAcGuCGCCGUCGGCg -3'
miRNA:   3'- -UUGCG-----CUAUGc--AGUaC-GCGGCAGCCG- -5'
8211 3' -55.4 NC_001978.2 + 12459 0.66 0.617147
Target:  5'- cAGCGUGA-ACGUgGUcGaCGCCuUCGGCa -3'
miRNA:   3'- -UUGCGCUaUGCAgUA-C-GCGGcAGCCG- -5'
8211 3' -55.4 NC_001978.2 + 5781 0.66 0.613785
Target:  5'- gGACGCGA-ACgGUCAguaccUGUGgcaguccgcucuuaCCGUCGGCg -3'
miRNA:   3'- -UUGCGCUaUG-CAGU-----ACGC--------------GGCAGCCG- -5'
8211 3' -55.4 NC_001978.2 + 18095 0.66 0.605947
Target:  5'- aAGCGCGGuUAC-UCcgGCGCCGacgcugacggUUGGCc -3'
miRNA:   3'- -UUGCGCU-AUGcAGuaCGCGGC----------AGCCG- -5'
8211 3' -55.4 NC_001978.2 + 32667 0.66 0.599237
Target:  5'- cACGCGAUacucguacGCGUCgagcaagggcgaaggGUucaGCGCCGUCguGGCa -3'
miRNA:   3'- uUGCGCUA--------UGCAG---------------UA---CGCGGCAG--CCG- -5'
8211 3' -55.4 NC_001978.2 + 15733 0.66 0.594769
Target:  5'- --aGUGAacuggGCGUaCGUGuCGCCGUCGaGCc -3'
miRNA:   3'- uugCGCUa----UGCA-GUAC-GCGGCAGC-CG- -5'
8211 3' -55.4 NC_001978.2 + 40264 0.67 0.583625
Target:  5'- uACGcCGcUACGUCuuccGUGCCGUCcugGGCg -3'
miRNA:   3'- uUGC-GCuAUGCAGua--CGCGGCAG---CCG- -5'
8211 3' -55.4 NC_001978.2 + 37843 0.67 0.572523
Target:  5'- gGACGUGggGCGaaGUGCcCCuuGUCGGCg -3'
miRNA:   3'- -UUGCGCuaUGCagUACGcGG--CAGCCG- -5'
8211 3' -55.4 NC_001978.2 + 22137 0.67 0.572523
Target:  5'- aGGCGCucaaacAgGUCGUGCGCUucgcugcccagGUCGGCg -3'
miRNA:   3'- -UUGCGcua---UgCAGUACGCGG-----------CAGCCG- -5'
8211 3' -55.4 NC_001978.2 + 1454 0.67 0.547193
Target:  5'- uGACGCG-UACGUguUGaCucaggacaccuucgGCCGUUGGCg -3'
miRNA:   3'- -UUGCGCuAUGCAguAC-G--------------CGGCAGCCG- -5'
8211 3' -55.4 NC_001978.2 + 38886 0.67 0.539553
Target:  5'- cAGCGCGAauugggcgggUACGUCGgcgggaagGCGCUuaCGGCu -3'
miRNA:   3'- -UUGCGCU----------AUGCAGUa-------CGCGGcaGCCG- -5'
8211 3' -55.4 NC_001978.2 + 3604 0.68 0.507251
Target:  5'- cGCGCGAaGCGUgGcGUGCCGcuaacucCGGCg -3'
miRNA:   3'- uUGCGCUaUGCAgUaCGCGGCa------GCCG- -5'
8211 3' -55.4 NC_001978.2 + 30923 0.68 0.496664
Target:  5'- uGACG-GGUGCGaCAugaaggcaugUGCGCCcagGUCGGCg -3'
miRNA:   3'- -UUGCgCUAUGCaGU----------ACGCGG---CAGCCG- -5'
8211 3' -55.4 NC_001978.2 + 30843 0.68 0.496664
Target:  5'- cAUGCGGUcgucacgaACGUCAcGaagGUCGUCGGCa -3'
miRNA:   3'- uUGCGCUA--------UGCAGUaCg--CGGCAGCCG- -5'
8211 3' -55.4 NC_001978.2 + 38729 0.68 0.495611
Target:  5'- aAGCGCGAcACGUCAuagacaaugaucaUGUugaGCCGccCGGCg -3'
miRNA:   3'- -UUGCGCUaUGCAGU-------------ACG---CGGCa-GCCG- -5'
8211 3' -55.4 NC_001978.2 + 24987 0.68 0.486178
Target:  5'- cACGcCGGaagcAUGUUGUGCGCagCGUCGGCg -3'
miRNA:   3'- uUGC-GCUa---UGCAGUACGCG--GCAGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.