miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8219 5' -47.1 NC_001978.2 + 12580 0.66 0.987921
Target:  5'- cGGCGAuuGGUUC-----ACGAAGGACCc -3'
miRNA:   3'- -CCGCUu-CUAAGagcugUGCUUCUUGG- -5'
8219 5' -47.1 NC_001978.2 + 3816 0.66 0.98613
Target:  5'- cGGCGGcacgccaaAGAUUC---GCGCGAuuuccGGAACCu -3'
miRNA:   3'- -CCGCU--------UCUAAGagcUGUGCU-----UCUUGG- -5'
8219 5' -47.1 NC_001978.2 + 31513 0.66 0.984142
Target:  5'- cGUGAAGGUg--UGGCGCGuAGGACa -3'
miRNA:   3'- cCGCUUCUAagaGCUGUGCuUCUUGg -5'
8219 5' -47.1 NC_001978.2 + 6530 0.66 0.983932
Target:  5'- cGCGAAGGUg--CGACuguuCGAAGcccugaaGGCCa -3'
miRNA:   3'- cCGCUUCUAagaGCUGu---GCUUC-------UUGG- -5'
8219 5' -47.1 NC_001978.2 + 9154 0.66 0.981946
Target:  5'- cGGCGAAuccgUCgcCGACGCGAAcGaAGCCc -3'
miRNA:   3'- -CCGCUUcua-AGa-GCUGUGCUU-C-UUGG- -5'
8219 5' -47.1 NC_001978.2 + 35820 0.66 0.981946
Target:  5'- cGGC-AAGGUUCUUGACGaccuGGGcGCCg -3'
miRNA:   3'- -CCGcUUCUAAGAGCUGUgc--UUCuUGG- -5'
8219 5' -47.1 NC_001978.2 + 22558 0.66 0.98148
Target:  5'- gGGCGAAGAcguccgggccagUCUCGAC-CGcuuGAaaGCCc -3'
miRNA:   3'- -CCGCUUCUa-----------AGAGCUGuGCuu-CU--UGG- -5'
8219 5' -47.1 NC_001978.2 + 37850 0.66 0.979528
Target:  5'- gGGCGAAGugccccUUgUCGGCG-GggGcGCCg -3'
miRNA:   3'- -CCGCUUCu-----AAgAGCUGUgCuuCuUGG- -5'
8219 5' -47.1 NC_001978.2 + 2387 0.67 0.977967
Target:  5'- cGCGAAGAgcuacacacggcgCUCGACGuguacCGGgugcGGAACCu -3'
miRNA:   3'- cCGCUUCUaa-----------GAGCUGU-----GCU----UCUUGG- -5'
8219 5' -47.1 NC_001978.2 + 32640 0.67 0.9766
Target:  5'- gGGCGAAgGGUUCagcgccgUCGugGC-AAGAACa -3'
miRNA:   3'- -CCGCUU-CUAAG-------AGCugUGcUUCUUGg -5'
8219 5' -47.1 NC_001978.2 + 35582 0.67 0.973984
Target:  5'- cGGCGccccuGAgcgUCGGCGCGAccgaagaccccGGGACCg -3'
miRNA:   3'- -CCGCuu---CUaagAGCUGUGCU-----------UCUUGG- -5'
8219 5' -47.1 NC_001978.2 + 30920 0.67 0.973681
Target:  5'- cGGUGAcGGGUg--CGACAUGAAGGcaugugcGCCc -3'
miRNA:   3'- -CCGCU-UCUAagaGCUGUGCUUCU-------UGG- -5'
8219 5' -47.1 NC_001978.2 + 38523 0.67 0.970836
Target:  5'- cGCGAAG----UCGAgCGCGAcgGGGGCCg -3'
miRNA:   3'- cCGCUUCuaagAGCU-GUGCU--UCUUGG- -5'
8219 5' -47.1 NC_001978.2 + 17354 0.67 0.967423
Target:  5'- cGGCaacGggGGcggCUCGcACACGGAGAuuuGCUa -3'
miRNA:   3'- -CCG---CuuCUaa-GAGC-UGUGCUUCU---UGG- -5'
8219 5' -47.1 NC_001978.2 + 36454 0.67 0.967423
Target:  5'- uGGCGAAGuacggCGugACGAAGcugggcgcguGGCCc -3'
miRNA:   3'- -CCGCUUCuaagaGCugUGCUUC----------UUGG- -5'
8219 5' -47.1 NC_001978.2 + 2908 0.67 0.962184
Target:  5'- gGGCGggGGcacuccccagcgCUCGACggcauugaggcGCGAgccugGGAACCg -3'
miRNA:   3'- -CCGCuuCUaa----------GAGCUG-----------UGCU-----UCUUGG- -5'
8219 5' -47.1 NC_001978.2 + 19550 0.68 0.950959
Target:  5'- cGUGAAGggUCaCGGCACGgcGucACCg -3'
miRNA:   3'- cCGCUUCuaAGaGCUGUGCuuCu-UGG- -5'
8219 5' -47.1 NC_001978.2 + 10855 0.69 0.940944
Target:  5'- -cCGAAGAUUCgCGcCAUGGGuGGACCg -3'
miRNA:   3'- ccGCUUCUAAGaGCuGUGCUU-CUUGG- -5'
8219 5' -47.1 NC_001978.2 + 23076 0.69 0.940944
Target:  5'- uGGCGAAGcg-UUCGAUcugggccggagACGAAGAcaacaaGCCg -3'
miRNA:   3'- -CCGCUUCuaaGAGCUG-----------UGCUUCU------UGG- -5'
8219 5' -47.1 NC_001978.2 + 26420 0.69 0.940944
Target:  5'- aGGCgGAAGAgu-UCGACGCGAAcgcgcaccuguuGAGCUu -3'
miRNA:   3'- -CCG-CUUCUaagAGCUGUGCUU------------CUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.