miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8220 5' -55.5 NC_001978.2 + 18343 0.66 0.633801
Target:  5'- -cGGCUUGCuGUGgUCGcCCAUggcgCCCCc -3'
miRNA:   3'- guUCGAACG-CGUgAGCuGGUGa---GGGG- -5'
8220 5' -55.5 NC_001978.2 + 39789 0.66 0.633801
Target:  5'- uGAGCUUGCcgaaGCG-UCgGGCgGCUUCCCa -3'
miRNA:   3'- gUUCGAACG----CGUgAG-CUGgUGAGGGG- -5'
8220 5' -55.5 NC_001978.2 + 20044 0.66 0.62256
Target:  5'- -cGGCUUcUGCucagCGGCCGgUCCCCa -3'
miRNA:   3'- guUCGAAcGCGuga-GCUGGUgAGGGG- -5'
8220 5' -55.5 NC_001978.2 + 32010 0.66 0.611327
Target:  5'- aGGGCUUGUGCAacgaagagcgCGcACCAUgaacgcgCCCCa -3'
miRNA:   3'- gUUCGAACGCGUga--------GC-UGGUGa------GGGG- -5'
8220 5' -55.5 NC_001978.2 + 10185 0.66 0.600114
Target:  5'- --cGCUUGaCGuCACccaggCGACCACUgCCUu -3'
miRNA:   3'- guuCGAAC-GC-GUGa----GCUGGUGAgGGG- -5'
8220 5' -55.5 NC_001978.2 + 23927 0.66 0.588929
Target:  5'- uGAGUgaGCGUGCUCGACgCuucgGCUUCCUa -3'
miRNA:   3'- gUUCGaaCGCGUGAGCUG-G----UGAGGGG- -5'
8220 5' -55.5 NC_001978.2 + 28558 0.66 0.584465
Target:  5'- gCAAGCggcagcaacacgGCcUugUCGACCuucaguGCUCCCCg -3'
miRNA:   3'- -GUUCGaa----------CGcGugAGCUGG------UGAGGGG- -5'
8220 5' -55.5 NC_001978.2 + 17316 0.67 0.577782
Target:  5'- gAAGCcgUGCGCGgguagugCG-CCgACUCCCCa -3'
miRNA:   3'- gUUCGa-ACGCGUga-----GCuGG-UGAGGGG- -5'
8220 5' -55.5 NC_001978.2 + 26537 0.67 0.566681
Target:  5'- gGAGCUUGCccGUACgaggUCGACCACgCCg- -3'
miRNA:   3'- gUUCGAACG--CGUG----AGCUGGUGaGGgg -5'
8220 5' -55.5 NC_001978.2 + 17260 0.67 0.560047
Target:  5'- gAAGgUcGCGCACcaagccugauucugCGACCACUcaagCCCCg -3'
miRNA:   3'- gUUCgAaCGCGUGa-------------GCUGGUGA----GGGG- -5'
8220 5' -55.5 NC_001978.2 + 11459 0.67 0.544655
Target:  5'- gCAAGCggucgGCGcCGCUCGACCugaACUUUgCg -3'
miRNA:   3'- -GUUCGaa---CGC-GUGAGCUGG---UGAGGgG- -5'
8220 5' -55.5 NC_001978.2 + 16183 0.68 0.512167
Target:  5'- aCGGGCUUGUuCcgACU-GACCaACUCCCCc -3'
miRNA:   3'- -GUUCGAACGcG--UGAgCUGG-UGAGGGG- -5'
8220 5' -55.5 NC_001978.2 + 31689 0.68 0.512167
Target:  5'- uCGAGUUgcUGUGCucACUCG-CCAUgCCCCa -3'
miRNA:   3'- -GUUCGA--ACGCG--UGAGCuGGUGaGGGG- -5'
8220 5' -55.5 NC_001978.2 + 32714 0.68 0.490959
Target:  5'- aGGGCgucaGCGuCAgUCGGCCGgUCCCg -3'
miRNA:   3'- gUUCGaa--CGC-GUgAGCUGGUgAGGGg -5'
8220 5' -55.5 NC_001978.2 + 36574 0.69 0.429992
Target:  5'- -uGGCa-GUGCACUUGAUCGCUCCg- -3'
miRNA:   3'- guUCGaaCGCGUGAGCUGGUGAGGgg -5'
8220 5' -55.5 NC_001978.2 + 38517 0.69 0.410676
Target:  5'- uGGGCUUGCuGCGCUCGAaucucgCGCUCgCg -3'
miRNA:   3'- gUUCGAACG-CGUGAGCUg-----GUGAGgGg -5'
8220 5' -55.5 NC_001978.2 + 15943 0.7 0.373706
Target:  5'- aCGGGCgcgacggGCGCcgACUCGAcguucCCGgUCCCCa -3'
miRNA:   3'- -GUUCGaa-----CGCG--UGAGCU-----GGUgAGGGG- -5'
8220 5' -55.5 NC_001978.2 + 8458 0.7 0.364823
Target:  5'- gCAGGCUUGCGCugg-GGCauuaGCUCUCCa -3'
miRNA:   3'- -GUUCGAACGCGugagCUGg---UGAGGGG- -5'
8220 5' -55.5 NC_001978.2 + 37741 0.71 0.339061
Target:  5'- aGGGCUauUGCGCGCUgccCGACgACggcgaCCCCu -3'
miRNA:   3'- gUUCGA--ACGCGUGA---GCUGgUGa----GGGG- -5'
8220 5' -55.5 NC_001978.2 + 34651 0.71 0.322634
Target:  5'- gGAGCUUGCGCGCcgucucaagCGucauacucACCAUUuCCCCa -3'
miRNA:   3'- gUUCGAACGCGUGa--------GC--------UGGUGA-GGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.