Results 1 - 20 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
8220 | 5' | -55.5 | NC_001978.2 | + | 18343 | 0.66 | 0.633801 |
Target: 5'- -cGGCUUGCuGUGgUCGcCCAUggcgCCCCc -3' miRNA: 3'- guUCGAACG-CGUgAGCuGGUGa---GGGG- -5' |
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8220 | 5' | -55.5 | NC_001978.2 | + | 39789 | 0.66 | 0.633801 |
Target: 5'- uGAGCUUGCcgaaGCG-UCgGGCgGCUUCCCa -3' miRNA: 3'- gUUCGAACG----CGUgAG-CUGgUGAGGGG- -5' |
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8220 | 5' | -55.5 | NC_001978.2 | + | 20044 | 0.66 | 0.62256 |
Target: 5'- -cGGCUUcUGCucagCGGCCGgUCCCCa -3' miRNA: 3'- guUCGAAcGCGuga-GCUGGUgAGGGG- -5' |
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8220 | 5' | -55.5 | NC_001978.2 | + | 32010 | 0.66 | 0.611327 |
Target: 5'- aGGGCUUGUGCAacgaagagcgCGcACCAUgaacgcgCCCCa -3' miRNA: 3'- gUUCGAACGCGUga--------GC-UGGUGa------GGGG- -5' |
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8220 | 5' | -55.5 | NC_001978.2 | + | 10185 | 0.66 | 0.600114 |
Target: 5'- --cGCUUGaCGuCACccaggCGACCACUgCCUu -3' miRNA: 3'- guuCGAAC-GC-GUGa----GCUGGUGAgGGG- -5' |
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8220 | 5' | -55.5 | NC_001978.2 | + | 23927 | 0.66 | 0.588929 |
Target: 5'- uGAGUgaGCGUGCUCGACgCuucgGCUUCCUa -3' miRNA: 3'- gUUCGaaCGCGUGAGCUG-G----UGAGGGG- -5' |
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8220 | 5' | -55.5 | NC_001978.2 | + | 28558 | 0.66 | 0.584465 |
Target: 5'- gCAAGCggcagcaacacgGCcUugUCGACCuucaguGCUCCCCg -3' miRNA: 3'- -GUUCGaa----------CGcGugAGCUGG------UGAGGGG- -5' |
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8220 | 5' | -55.5 | NC_001978.2 | + | 17316 | 0.67 | 0.577782 |
Target: 5'- gAAGCcgUGCGCGgguagugCG-CCgACUCCCCa -3' miRNA: 3'- gUUCGa-ACGCGUga-----GCuGG-UGAGGGG- -5' |
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8220 | 5' | -55.5 | NC_001978.2 | + | 26537 | 0.67 | 0.566681 |
Target: 5'- gGAGCUUGCccGUACgaggUCGACCACgCCg- -3' miRNA: 3'- gUUCGAACG--CGUG----AGCUGGUGaGGgg -5' |
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8220 | 5' | -55.5 | NC_001978.2 | + | 17260 | 0.67 | 0.560047 |
Target: 5'- gAAGgUcGCGCACcaagccugauucugCGACCACUcaagCCCCg -3' miRNA: 3'- gUUCgAaCGCGUGa-------------GCUGGUGA----GGGG- -5' |
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8220 | 5' | -55.5 | NC_001978.2 | + | 11459 | 0.67 | 0.544655 |
Target: 5'- gCAAGCggucgGCGcCGCUCGACCugaACUUUgCg -3' miRNA: 3'- -GUUCGaa---CGC-GUGAGCUGG---UGAGGgG- -5' |
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8220 | 5' | -55.5 | NC_001978.2 | + | 16183 | 0.68 | 0.512167 |
Target: 5'- aCGGGCUUGUuCcgACU-GACCaACUCCCCc -3' miRNA: 3'- -GUUCGAACGcG--UGAgCUGG-UGAGGGG- -5' |
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8220 | 5' | -55.5 | NC_001978.2 | + | 31689 | 0.68 | 0.512167 |
Target: 5'- uCGAGUUgcUGUGCucACUCG-CCAUgCCCCa -3' miRNA: 3'- -GUUCGA--ACGCG--UGAGCuGGUGaGGGG- -5' |
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8220 | 5' | -55.5 | NC_001978.2 | + | 32714 | 0.68 | 0.490959 |
Target: 5'- aGGGCgucaGCGuCAgUCGGCCGgUCCCg -3' miRNA: 3'- gUUCGaa--CGC-GUgAGCUGGUgAGGGg -5' |
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8220 | 5' | -55.5 | NC_001978.2 | + | 36574 | 0.69 | 0.429992 |
Target: 5'- -uGGCa-GUGCACUUGAUCGCUCCg- -3' miRNA: 3'- guUCGaaCGCGUGAGCUGGUGAGGgg -5' |
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8220 | 5' | -55.5 | NC_001978.2 | + | 38517 | 0.69 | 0.410676 |
Target: 5'- uGGGCUUGCuGCGCUCGAaucucgCGCUCgCg -3' miRNA: 3'- gUUCGAACG-CGUGAGCUg-----GUGAGgGg -5' |
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8220 | 5' | -55.5 | NC_001978.2 | + | 15943 | 0.7 | 0.373706 |
Target: 5'- aCGGGCgcgacggGCGCcgACUCGAcguucCCGgUCCCCa -3' miRNA: 3'- -GUUCGaa-----CGCG--UGAGCU-----GGUgAGGGG- -5' |
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8220 | 5' | -55.5 | NC_001978.2 | + | 8458 | 0.7 | 0.364823 |
Target: 5'- gCAGGCUUGCGCugg-GGCauuaGCUCUCCa -3' miRNA: 3'- -GUUCGAACGCGugagCUGg---UGAGGGG- -5' |
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8220 | 5' | -55.5 | NC_001978.2 | + | 37741 | 0.71 | 0.339061 |
Target: 5'- aGGGCUauUGCGCGCUgccCGACgACggcgaCCCCu -3' miRNA: 3'- gUUCGA--ACGCGUGA---GCUGgUGa----GGGG- -5' |
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8220 | 5' | -55.5 | NC_001978.2 | + | 34651 | 0.71 | 0.322634 |
Target: 5'- gGAGCUUGCGCGCcgucucaagCGucauacucACCAUUuCCCCa -3' miRNA: 3'- gUUCGAACGCGUGa--------GC--------UGGUGA-GGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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