miRNA display CGI

Results 21 - 27 of 27 are showing below:
Show page: 1 2

<< Previous Page | Next Page >>

ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
8220	5'	-55.5	NC_001978.2	+	28558	0.66	0.584465
	Target:  5'- gCAAGCggcagcaacacgGCcUugUCGACCuucaguGCUCCCCg -3' miRNA:   3'- -GUUCGaa----------CGcGugAGCUGG------UGAGGGG- -5'
8220	5'	-55.5	NC_001978.2	+	23927	0.66	0.588929
	Target:  5'- uGAGUgaGCGUGCUCGACgCuucgGCUUCCUa -3' miRNA:   3'- gUUCGaaCGCGUGAGCUG-G----UGAGGGG- -5'
8220	5'	-55.5	NC_001978.2	+	10185	0.66	0.600114
	Target:  5'- --cGCUUGaCGuCACccaggCGACCACUgCCUu -3' miRNA:   3'- guuCGAAC-GC-GUGa----GCUGGUGAgGGG- -5'
8220	5'	-55.5	NC_001978.2	+	32010	0.66	0.611327
	Target:  5'- aGGGCUUGUGCAacgaagagcgCGcACCAUgaacgcgCCCCa -3' miRNA:   3'- gUUCGAACGCGUga--------GC-UGGUGa------GGGG- -5'
8220	5'	-55.5	NC_001978.2	+	20044	0.66	0.62256
	Target:  5'- -cGGCUUcUGCucagCGGCCGgUCCCCa -3' miRNA:   3'- guUCGAAcGCGuga-GCUGGUgAGGGG- -5'
8220	5'	-55.5	NC_001978.2	+	39789	0.66	0.633801
	Target:  5'- uGAGCUUGCcgaaGCG-UCgGGCgGCUUCCCa -3' miRNA:   3'- gUUCGAACG----CGUgAG-CUGgUGAGGGG- -5'
8220	5'	-55.5	NC_001978.2	+	18343	0.66	0.633801
	Target:  5'- -cGGCUUGCuGUGgUCGcCCAUggcgCCCCc -3' miRNA:   3'- guUCGAACG-CGUgAGCuGGUGa---GGGG- -5'

<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home