miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8221 3' -57.1 NC_001978.2 + 1709 0.66 0.551831
Target:  5'- cGUUCAGCGCGACgUGAUC-CGgUa-- -3'
miRNA:   3'- -UAAGUCGCGCUGgGCUAGuGCgAggc -5'
8221 3' -57.1 NC_001978.2 + 35451 0.66 0.551831
Target:  5'- uUUCGGCGCG-UCCGuaCugGCgUCCGc -3'
miRNA:   3'- uAAGUCGCGCuGGGCuaGugCG-AGGC- -5'
8221 3' -57.1 NC_001978.2 + 12396 0.66 0.551831
Target:  5'- ---aGGCGuCGACCaCGuUCACGCUgaCCGu -3'
miRNA:   3'- uaagUCGC-GCUGG-GCuAGUGCGA--GGC- -5'
8221 3' -57.1 NC_001978.2 + 33315 0.66 0.551831
Target:  5'- --gCAGCGCGAaCCGAaCcCGUUCCu -3'
miRNA:   3'- uaaGUCGCGCUgGGCUaGuGCGAGGc -5'
8221 3' -57.1 NC_001978.2 + 37798 0.66 0.540989
Target:  5'- --gCAGCGCGcaauaGCCCu-UCAUgGCUCCGu -3'
miRNA:   3'- uaaGUCGCGC-----UGGGcuAGUG-CGAGGC- -5'
8221 3' -57.1 NC_001978.2 + 761 0.66 0.540989
Target:  5'- gGUUCAcCGgGACCCGAagGCGCUg-- -3'
miRNA:   3'- -UAAGUcGCgCUGGGCUagUGCGAggc -5'
8221 3' -57.1 NC_001978.2 + 37956 0.66 0.530219
Target:  5'- --cCGGC-CGACCCGcUCACGCg-CGa -3'
miRNA:   3'- uaaGUCGcGCUGGGCuAGUGCGagGC- -5'
8221 3' -57.1 NC_001978.2 + 28359 0.66 0.530219
Target:  5'- -aUCaAGCGCGAgCCCGG-CGCGUUgCa -3'
miRNA:   3'- uaAG-UCGCGCU-GGGCUaGUGCGAgGc -5'
8221 3' -57.1 NC_001978.2 + 12511 0.66 0.529147
Target:  5'- -gUCGGCGUu-CCCGGUCggcuucacgcuguACGaCUCCGg -3'
miRNA:   3'- uaAGUCGCGcuGGGCUAG-------------UGC-GAGGC- -5'
8221 3' -57.1 NC_001978.2 + 39405 0.66 0.508924
Target:  5'- ---gAGCGUGAUCgGGUCGCGCUg-- -3'
miRNA:   3'- uaagUCGCGCUGGgCUAGUGCGAggc -5'
8221 3' -57.1 NC_001978.2 + 18935 0.66 0.498412
Target:  5'- gGUUCGG-GUGACUCGAcccggCACGCUgagCCGg -3'
miRNA:   3'- -UAAGUCgCGCUGGGCUa----GUGCGA---GGC- -5'
8221 3' -57.1 NC_001978.2 + 19058 0.67 0.487997
Target:  5'- -gUCAGCGCGgucGCCCaGUUGucuaGCUCCGu -3'
miRNA:   3'- uaAGUCGCGC---UGGGcUAGUg---CGAGGC- -5'
8221 3' -57.1 NC_001978.2 + 242 0.67 0.487997
Target:  5'- -cUCAGCggcagcguugGCGuuCCCGGUCcgaaGCUCCGg -3'
miRNA:   3'- uaAGUCG----------CGCu-GGGCUAGug--CGAGGC- -5'
8221 3' -57.1 NC_001978.2 + 8653 0.67 0.487997
Target:  5'- -gUCGGCG-GGCUCGAUCucagggaacuuGCGCUUCa -3'
miRNA:   3'- uaAGUCGCgCUGGGCUAG-----------UGCGAGGc -5'
8221 3' -57.1 NC_001978.2 + 19883 0.67 0.477686
Target:  5'- ---gGGC-CGACgCGAUucaCGCGCUCCGg -3'
miRNA:   3'- uaagUCGcGCUGgGCUA---GUGCGAGGC- -5'
8221 3' -57.1 NC_001978.2 + 19485 0.67 0.477686
Target:  5'- gGUUCAG-GCG-CUCu-UCGCGCUCCGc -3'
miRNA:   3'- -UAAGUCgCGCuGGGcuAGUGCGAGGC- -5'
8221 3' -57.1 NC_001978.2 + 34226 0.67 0.457395
Target:  5'- --aCGGCGCucaguuGCCCacguGggCACGCUCCGg -3'
miRNA:   3'- uaaGUCGCGc-----UGGG----CuaGUGCGAGGC- -5'
8221 3' -57.1 NC_001978.2 + 29017 0.67 0.457395
Target:  5'- --cCGGCGCccuuGAacaccuUCCGGUCGCGCUUCGu -3'
miRNA:   3'- uaaGUCGCG----CU------GGGCUAGUGCGAGGC- -5'
8221 3' -57.1 NC_001978.2 + 24038 0.67 0.451398
Target:  5'- -gUCGGCgaccugaucaauuacGCGACCCGuugcgggaAUCGCGC-CCGu -3'
miRNA:   3'- uaAGUCG---------------CGCUGGGC--------UAGUGCGaGGC- -5'
8221 3' -57.1 NC_001978.2 + 19535 0.67 0.447424
Target:  5'- --cCGGCGcCGACCacAUCACGC-CCGg -3'
miRNA:   3'- uaaGUCGC-GCUGGgcUAGUGCGaGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.