miRNA display CGI


Results 1 - 20 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8222 5' -55.4 NC_001978.2 + 28168 0.66 0.643118
Target:  5'- cGCCGGGCUcGAcgugaucuauacGGCgCGCCuGAA-CCCg -3'
miRNA:   3'- aCGGCUUGAaCU------------UCG-GCGG-CUUcGGG- -5'
8222 5' -55.4 NC_001978.2 + 8627 0.66 0.643118
Target:  5'- aGCUGAACcUGAAGgggaaGgCGAAGCCg -3'
miRNA:   3'- aCGGCUUGaACUUCgg---CgGCUUCGGg -5'
8222 5' -55.4 NC_001978.2 + 3336 0.66 0.643118
Target:  5'- cGCCGGAaggugUUUGAGGCguacgacauugaCGCCGAcgggaacgaAGUCCu -3'
miRNA:   3'- aCGGCUU-----GAACUUCG------------GCGGCU---------UCGGG- -5'
8222 5' -55.4 NC_001978.2 + 36689 0.66 0.643118
Target:  5'- cGCgGAACcUG-AGCCgguaccggcggaGCCuGAGCCCg -3'
miRNA:   3'- aCGgCUUGaACuUCGG------------CGGcUUCGGG- -5'
8222 5' -55.4 NC_001978.2 + 30343 0.66 0.636369
Target:  5'- cGCCGAagggcaagcgacucaGCaaGGAaCgCGCCGAAGCCg -3'
miRNA:   3'- aCGGCU---------------UGaaCUUcG-GCGGCUUCGGg -5'
8222 5' -55.4 NC_001978.2 + 35808 0.66 0.636369
Target:  5'- cGCCGAAgacgacggcaagguuCUUGAcgaccuGGgCGCCGAccuucccuuGCCCg -3'
miRNA:   3'- aCGGCUU---------------GAACU------UCgGCGGCUu--------CGGG- -5'
8222 5' -55.4 NC_001978.2 + 27822 0.66 0.631869
Target:  5'- gGCgGAcGCUUcgccGAAGCCGCCGAcuacguacugaAGCaCUg -3'
miRNA:   3'- aCGgCU-UGAA----CUUCGGCGGCU-----------UCG-GG- -5'
8222 5' -55.4 NC_001978.2 + 18998 0.66 0.631869
Target:  5'- gUGCCGggUc--GAGUCacccgaaccauGCUGAAGCCCc -3'
miRNA:   3'- -ACGGCuuGaacUUCGG-----------CGGCUUCGGG- -5'
8222 5' -55.4 NC_001978.2 + 39102 0.66 0.631869
Target:  5'- aGCCGGGCagucAAGCCGCCauucaCCCg -3'
miRNA:   3'- aCGGCUUGaac-UUCGGCGGcuuc-GGG- -5'
8222 5' -55.4 NC_001978.2 + 6748 0.66 0.631869
Target:  5'- aGCCGGucACgUUGGuuGGCuucgCGCCGGAGCgCa -3'
miRNA:   3'- aCGGCU--UG-AACU--UCG----GCGGCUUCGgG- -5'
8222 5' -55.4 NC_001978.2 + 5889 0.66 0.631869
Target:  5'- uUGCCG---UUGAAGgUGuCCGggGCgCCg -3'
miRNA:   3'- -ACGGCuugAACUUCgGC-GGCuuCG-GG- -5'
8222 5' -55.4 NC_001978.2 + 19175 0.66 0.631869
Target:  5'- cGCCGGACcaacccgUGAaggucAGUCGgCGggGgCCg -3'
miRNA:   3'- aCGGCUUGa------ACU-----UCGGCgGCuuCgGG- -5'
8222 5' -55.4 NC_001978.2 + 32903 0.66 0.620621
Target:  5'- cGCCGAcACU--GAGCCGgUCGu-GCCCc -3'
miRNA:   3'- aCGGCU-UGAacUUCGGC-GGCuuCGGG- -5'
8222 5' -55.4 NC_001978.2 + 12696 0.66 0.620621
Target:  5'- cGCUGggUUgGGAGuuGUCGGgucAGCUCa -3'
miRNA:   3'- aCGGCuuGAaCUUCggCGGCU---UCGGG- -5'
8222 5' -55.4 NC_001978.2 + 37390 0.66 0.617248
Target:  5'- cGCCGAccaucgauagcgccGC-UGAGGCacugacCGCCGGAGUgCg -3'
miRNA:   3'- aCGGCU--------------UGaACUUCG------GCGGCUUCGgG- -5'
8222 5' -55.4 NC_001978.2 + 24635 0.66 0.609383
Target:  5'- aUGCCGAcCaUGAcGCCGCCGAcgaacGCa- -3'
miRNA:   3'- -ACGGCUuGaACUuCGGCGGCUu----CGgg -5'
8222 5' -55.4 NC_001978.2 + 30218 0.66 0.604893
Target:  5'- cGCUGuGCggGAAGagcgcaacggcaaCGCCGggGCCg -3'
miRNA:   3'- aCGGCuUGaaCUUCg------------GCGGCuuCGGg -5'
8222 5' -55.4 NC_001978.2 + 19722 0.66 0.598165
Target:  5'- cGCC-AACgcGAAGaCUGCCGAaauGGCUCa -3'
miRNA:   3'- aCGGcUUGaaCUUC-GGCGGCU---UCGGG- -5'
8222 5' -55.4 NC_001978.2 + 30935 0.66 0.598165
Target:  5'- aUGCCGAaggaguGCUUGAGaauGUcgCGCUGAGuggcGCCCa -3'
miRNA:   3'- -ACGGCU------UGAACUU---CG--GCGGCUU----CGGG- -5'
8222 5' -55.4 NC_001978.2 + 10061 0.66 0.598165
Target:  5'- gUGCuCcGACacGAAGCCGCCGAccgucGCCa -3'
miRNA:   3'- -ACG-GcUUGaaCUUCGGCGGCUu----CGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.