Results 1 - 20 of 109 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
8222 | 5' | -55.4 | NC_001978.2 | + | 28168 | 0.66 | 0.643118 |
Target: 5'- cGCCGGGCUcGAcgugaucuauacGGCgCGCCuGAA-CCCg -3' miRNA: 3'- aCGGCUUGAaCU------------UCG-GCGG-CUUcGGG- -5' |
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8222 | 5' | -55.4 | NC_001978.2 | + | 8627 | 0.66 | 0.643118 |
Target: 5'- aGCUGAACcUGAAGgggaaGgCGAAGCCg -3' miRNA: 3'- aCGGCUUGaACUUCgg---CgGCUUCGGg -5' |
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8222 | 5' | -55.4 | NC_001978.2 | + | 3336 | 0.66 | 0.643118 |
Target: 5'- cGCCGGAaggugUUUGAGGCguacgacauugaCGCCGAcgggaacgaAGUCCu -3' miRNA: 3'- aCGGCUU-----GAACUUCG------------GCGGCU---------UCGGG- -5' |
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8222 | 5' | -55.4 | NC_001978.2 | + | 36689 | 0.66 | 0.643118 |
Target: 5'- cGCgGAACcUG-AGCCgguaccggcggaGCCuGAGCCCg -3' miRNA: 3'- aCGgCUUGaACuUCGG------------CGGcUUCGGG- -5' |
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8222 | 5' | -55.4 | NC_001978.2 | + | 30343 | 0.66 | 0.636369 |
Target: 5'- cGCCGAagggcaagcgacucaGCaaGGAaCgCGCCGAAGCCg -3' miRNA: 3'- aCGGCU---------------UGaaCUUcG-GCGGCUUCGGg -5' |
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8222 | 5' | -55.4 | NC_001978.2 | + | 35808 | 0.66 | 0.636369 |
Target: 5'- cGCCGAAgacgacggcaagguuCUUGAcgaccuGGgCGCCGAccuucccuuGCCCg -3' miRNA: 3'- aCGGCUU---------------GAACU------UCgGCGGCUu--------CGGG- -5' |
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8222 | 5' | -55.4 | NC_001978.2 | + | 27822 | 0.66 | 0.631869 |
Target: 5'- gGCgGAcGCUUcgccGAAGCCGCCGAcuacguacugaAGCaCUg -3' miRNA: 3'- aCGgCU-UGAA----CUUCGGCGGCU-----------UCG-GG- -5' |
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8222 | 5' | -55.4 | NC_001978.2 | + | 18998 | 0.66 | 0.631869 |
Target: 5'- gUGCCGggUc--GAGUCacccgaaccauGCUGAAGCCCc -3' miRNA: 3'- -ACGGCuuGaacUUCGG-----------CGGCUUCGGG- -5' |
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8222 | 5' | -55.4 | NC_001978.2 | + | 39102 | 0.66 | 0.631869 |
Target: 5'- aGCCGGGCagucAAGCCGCCauucaCCCg -3' miRNA: 3'- aCGGCUUGaac-UUCGGCGGcuuc-GGG- -5' |
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8222 | 5' | -55.4 | NC_001978.2 | + | 6748 | 0.66 | 0.631869 |
Target: 5'- aGCCGGucACgUUGGuuGGCuucgCGCCGGAGCgCa -3' miRNA: 3'- aCGGCU--UG-AACU--UCG----GCGGCUUCGgG- -5' |
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8222 | 5' | -55.4 | NC_001978.2 | + | 5889 | 0.66 | 0.631869 |
Target: 5'- uUGCCG---UUGAAGgUGuCCGggGCgCCg -3' miRNA: 3'- -ACGGCuugAACUUCgGC-GGCuuCG-GG- -5' |
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8222 | 5' | -55.4 | NC_001978.2 | + | 19175 | 0.66 | 0.631869 |
Target: 5'- cGCCGGACcaacccgUGAaggucAGUCGgCGggGgCCg -3' miRNA: 3'- aCGGCUUGa------ACU-----UCGGCgGCuuCgGG- -5' |
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8222 | 5' | -55.4 | NC_001978.2 | + | 32903 | 0.66 | 0.620621 |
Target: 5'- cGCCGAcACU--GAGCCGgUCGu-GCCCc -3' miRNA: 3'- aCGGCU-UGAacUUCGGC-GGCuuCGGG- -5' |
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8222 | 5' | -55.4 | NC_001978.2 | + | 12696 | 0.66 | 0.620621 |
Target: 5'- cGCUGggUUgGGAGuuGUCGGgucAGCUCa -3' miRNA: 3'- aCGGCuuGAaCUUCggCGGCU---UCGGG- -5' |
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8222 | 5' | -55.4 | NC_001978.2 | + | 37390 | 0.66 | 0.617248 |
Target: 5'- cGCCGAccaucgauagcgccGC-UGAGGCacugacCGCCGGAGUgCg -3' miRNA: 3'- aCGGCU--------------UGaACUUCG------GCGGCUUCGgG- -5' |
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8222 | 5' | -55.4 | NC_001978.2 | + | 24635 | 0.66 | 0.609383 |
Target: 5'- aUGCCGAcCaUGAcGCCGCCGAcgaacGCa- -3' miRNA: 3'- -ACGGCUuGaACUuCGGCGGCUu----CGgg -5' |
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8222 | 5' | -55.4 | NC_001978.2 | + | 30218 | 0.66 | 0.604893 |
Target: 5'- cGCUGuGCggGAAGagcgcaacggcaaCGCCGggGCCg -3' miRNA: 3'- aCGGCuUGaaCUUCg------------GCGGCuuCGGg -5' |
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8222 | 5' | -55.4 | NC_001978.2 | + | 19722 | 0.66 | 0.598165 |
Target: 5'- cGCC-AACgcGAAGaCUGCCGAaauGGCUCa -3' miRNA: 3'- aCGGcUUGaaCUUC-GGCGGCU---UCGGG- -5' |
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8222 | 5' | -55.4 | NC_001978.2 | + | 30935 | 0.66 | 0.598165 |
Target: 5'- aUGCCGAaggaguGCUUGAGaauGUcgCGCUGAGuggcGCCCa -3' miRNA: 3'- -ACGGCU------UGAACUU---CG--GCGGCUU----CGGG- -5' |
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8222 | 5' | -55.4 | NC_001978.2 | + | 10061 | 0.66 | 0.598165 |
Target: 5'- gUGCuCcGACacGAAGCCGCCGAccgucGCCa -3' miRNA: 3'- -ACG-GcUUGaaCUUCGGCGGCUu----CGGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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